Cluster: HRGMv2_0140_CGC16
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_05186
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_26 | HRGMv2_0140_26_20 | 23735 | 25606 | - | GH127 |
| pfam | HRGMv2_0140_26 | HRGMv2_0140_26_21 | 25671 | 26486 | - | Pantoate_transf |
| pfam | HRGMv2_0140_26 | HRGMv2_0140_26_22 | 26637 | 27170 | - | SpoU_methylase |
| TC | HRGMv2_0140_26 | HRGMv2_0140_26_23 | 27296 | 29503 | + | 3.A.10.1.10 |
Gene ID: HRGMv2_0140_26_20
Type: CAZyme
Location: 23735 - 25606 (-)
Type: CAZyme
Location: 23735 - 25606 (-)
Gene ID: HRGMv2_0140_26_21
Type: pfam
Location: 25671 - 26486 (-)
Type: pfam
Location: 25671 - 26486 (-)
Gene ID: HRGMv2_0140_26_22
Type: pfam
Location: 26637 - 27170 (-)
Type: pfam
Location: 26637 - 27170 (-)
Gene ID: HRGMv2_0140_26_23
Type: TC
Location: 27296 - 29503 (+)
Type: TC
Location: 27296 - 29503 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_26_20 | vegetarian > omnivore | 1.74886 | 0.00180 |
| HRGMv2_0140_26_22 | vegan > omnivore | 1.73489 | 0.01548 |
| HRGMv2_0140_26_22 | vegetarian > omnivore | 1.61326 | 0.00180 |