Cluster: HRGMv2_0140_CGC33
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_07887
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_93 | HRGMv2_0140_93_4 | 3785 | 5716 | - | 2.A.16.2.2 |
| STP | HRGMv2_0140_93 | HRGMv2_0140_93_5 | 5739 | 6362 | - | Nitroreductase |
| pfam | HRGMv2_0140_93 | HRGMv2_0140_93_6 | 6589 | 7557 | + | DUF3089 |
| CAZyme | HRGMv2_0140_93 | HRGMv2_0140_93_7 | 7701 | 9878 | + | GH95 |
Gene ID: HRGMv2_0140_93_4
Type: TC
Location: 3785 - 5716 (-)
Type: TC
Location: 3785 - 5716 (-)
Gene ID: HRGMv2_0140_93_5
Type: STP
Location: 5739 - 6362 (-)
Type: STP
Location: 5739 - 6362 (-)
Gene ID: HRGMv2_0140_93_6
Type: pfam
Location: 6589 - 7557 (+)
Type: pfam
Location: 6589 - 7557 (+)
Gene ID: HRGMv2_0140_93_7
Type: CAZyme
Location: 7701 - 9878 (+)
Type: CAZyme
Location: 7701 - 9878 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_93_6 | vegetarian > omnivore | 1.44353 | 0.00180 |
| HRGMv2_0140_93_7 | vegetarian > omnivore | 1.17786 | 0.00180 |