Cluster: HRGMv2_0140_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_07886
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_12 | HRGMv2_0140_12_25 | 26445 | 28619 | + | GH78 |
| NULL(UNKNOWN) | HRGMv2_0140_12 | HRGMv2_0140_12_26 | 28833 | 30041 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0140_12 | HRGMv2_0140_12_27 | 30286 | 31611 | - | OEP | OEP |
| TC | HRGMv2_0140_12 | HRGMv2_0140_12_28 | 31608 | 34661 | - | 2.A.6.2.38 |
| TC | HRGMv2_0140_12 | HRGMv2_0140_12_29 | 34859 | 35881 | - | 2.A.6.2.6 |
| TC | HRGMv2_0140_12 | HRGMv2_0140_12_30 | 36096 | 37307 | - | 2.A.1.21.22 |
Gene ID: HRGMv2_0140_12_25
Type: CAZyme
Location: 26445 - 28619 (+)
Type: CAZyme
Location: 26445 - 28619 (+)
Gene ID: HRGMv2_0140_12_26
Type:
Location: 28833 - 30041 (+)
Type:
Location: 28833 - 30041 (+)
Gene ID: HRGMv2_0140_12_27
Type: pfam
Location: 30286 - 31611 (-)
Type: pfam
Location: 30286 - 31611 (-)
Gene ID: HRGMv2_0140_12_28
Type: TC
Location: 31608 - 34661 (-)
Type: TC
Location: 31608 - 34661 (-)
Gene ID: HRGMv2_0140_12_29
Type: TC
Location: 34859 - 35881 (-)
Type: TC
Location: 34859 - 35881 (-)
Gene ID: HRGMv2_0140_12_30
Type: TC
Location: 36096 - 37307 (-)
Type: TC
Location: 36096 - 37307 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_12_25 | vegetarian > omnivore | 1.53456 | 0.00180 |
| HRGMv2_0140_12_27 | vegan > omnivore | 1.42194 | 0.01548 |
| HRGMv2_0140_12_27 | vegetarian > omnivore | 1.95069 | 0.00180 |
| HRGMv2_0140_12_29 | vegetarian > omnivore | 1.27018 | 0.00180 |