Cluster: HRGMv2_0140_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_05163
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_29 | HRGMv2_0140_29_4 | 5627 | 6955 | - | GT30 |
| TF | HRGMv2_0140_29 | HRGMv2_0140_29_5 | 6961 | 7626 | - | 0037767 |
| pfam | HRGMv2_0140_29 | HRGMv2_0140_29_6 | 7887 | 9953 | - | Rotamase | Rotamase_2 | Rotamase_3 | SurA_N_2 |
| TC | HRGMv2_0140_29 | HRGMv2_0140_29_7 | 10074 | 11366 | - | 9.A.40.2.2 |
Gene ID: HRGMv2_0140_29_4
Type: CAZyme
Location: 5627 - 6955 (-)
Type: CAZyme
Location: 5627 - 6955 (-)
Gene ID: HRGMv2_0140_29_5
Type: TF
Location: 6961 - 7626 (-)
Type: TF
Location: 6961 - 7626 (-)
Gene ID: HRGMv2_0140_29_6
Type: pfam
Location: 7887 - 9953 (-)
Type: pfam
Location: 7887 - 9953 (-)
Gene ID: HRGMv2_0140_29_7
Type: TC
Location: 10074 - 11366 (-)
Type: TC
Location: 10074 - 11366 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_29_5 | vegetarian > omnivore | 1.61290 | 0.00180 |
| HRGMv2_0140_29_6 | vegetarian > omnivore | 1.12518 | 0.00180 |
| HRGMv2_0140_29_7 | vegetarian > omnivore | 1.08126 | 0.00180 |