Cluster: HRGMv2_0140_CGC2
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_06554
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_2 | HRGMv2_0140_2_1 | 1 | 1023 | - | 9.A.40.2.4 |
| pfam | HRGMv2_0140_2 | HRGMv2_0140_2_2 | 1311 | 2879 | - | Tubulin | FtsZ_C |
| TC | HRGMv2_0140_2 | HRGMv2_0140_2_3 | 2893 | 4326 | - | 9.B.157.1.3 |
| NULL(UNKNOWN) | HRGMv2_0140_2 | HRGMv2_0140_2_4 | 4445 | 5257 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0140_2 | HRGMv2_0140_2_5 | 5508 | 6884 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | HRGMv2_0140_2 | HRGMv2_0140_2_6 | 7096 | 8217 | - | GT28 |
| NULL(UNKNOWN) | HRGMv2_0140_2 | HRGMv2_0140_2_7 | 8297 | 8917 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0140_2 | HRGMv2_0140_2_8 | 8761 | 10062 | - | 2.A.103.1.3 |
| NULL(UNKNOWN) | HRGMv2_0140_2 | HRGMv2_0140_2_9 | 10153 | 10632 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0140_2 | HRGMv2_0140_2_10 | 10525 | 11883 | - | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | HRGMv2_0140_2 | HRGMv2_0140_2_11 | 11886 | 13133 | - | 9.B.146.1.6 |
| pfam | HRGMv2_0140_2 | HRGMv2_0140_2_12 | 13139 | 14797 | - | PQQ_2 |
| pfam | HRGMv2_0140_2 | HRGMv2_0140_2_13 | 14876 | 16324 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | HRGMv2_0140_2 | HRGMv2_0140_2_14 | 16433 | 18748 | - | 2.A.37.1.12 |
Gene ID: HRGMv2_0140_2_1
Type: TC
Location: 1 - 1023 (-)
Type: TC
Location: 1 - 1023 (-)
Gene ID: HRGMv2_0140_2_2
Type: pfam
Location: 1311 - 2879 (-)
Type: pfam
Location: 1311 - 2879 (-)
Gene ID: HRGMv2_0140_2_3
Type: TC
Location: 2893 - 4326 (-)
Type: TC
Location: 2893 - 4326 (-)
Gene ID: HRGMv2_0140_2_4
Type:
Location: 4445 - 5257 (-)
Type:
Location: 4445 - 5257 (-)
Gene ID: HRGMv2_0140_2_5
Type: pfam
Location: 5508 - 6884 (-)
Type: pfam
Location: 5508 - 6884 (-)
Gene ID: HRGMv2_0140_2_6
Type: CAZyme
Location: 7096 - 8217 (-)
Type: CAZyme
Location: 7096 - 8217 (-)
Gene ID: HRGMv2_0140_2_7
Type:
Location: 8297 - 8917 (+)
Type:
Location: 8297 - 8917 (+)
Gene ID: HRGMv2_0140_2_8
Type: TC
Location: 8761 - 10062 (-)
Type: TC
Location: 8761 - 10062 (-)
Gene ID: HRGMv2_0140_2_9
Type:
Location: 10153 - 10632 (+)
Type:
Location: 10153 - 10632 (+)
Gene ID: HRGMv2_0140_2_10
Type: pfam
Location: 10525 - 11883 (-)
Type: pfam
Location: 10525 - 11883 (-)
Gene ID: HRGMv2_0140_2_11
Type: TC
Location: 11886 - 13133 (-)
Type: TC
Location: 11886 - 13133 (-)
Gene ID: HRGMv2_0140_2_12
Type: pfam
Location: 13139 - 14797 (-)
Type: pfam
Location: 13139 - 14797 (-)
Gene ID: HRGMv2_0140_2_13
Type: pfam
Location: 14876 - 16324 (-)
Type: pfam
Location: 14876 - 16324 (-)
Gene ID: HRGMv2_0140_2_14
Type: TC
Location: 16433 - 18748 (-)
Type: TC
Location: 16433 - 18748 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_2_1 | vegan > omnivore | 1.23742 | 0.01548 |
| HRGMv2_0140_2_1 | vegetarian > omnivore | 1.76658 | 0.00180 |
| HRGMv2_0140_2_3 | vegetarian > omnivore | 1.08663 | 0.00180 |
| HRGMv2_0140_2_4 | vegetarian > omnivore | 1.37801 | 0.00180 |
| HRGMv2_0140_2_8 | vegetarian > omnivore | 1.08597 | 0.00180 |
| HRGMv2_0140_2_9 | vegan > omnivore | 1.26916 | 0.01548 |
| HRGMv2_0140_2_9 | vegetarian > omnivore | 1.42754 | 0.00180 |
| HRGMv2_0140_2_12 | vegetarian > omnivore | 1.32964 | 0.00180 |
| HRGMv2_0140_2_14 | vegetarian > omnivore | 1.49545 | 0.00180 |