Cluster: HRGMv2_0140_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_05940
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_85 | HRGMv2_0140_85_4 | 4579 | 6261 | - | 2.A.17.1.1 |
| CAZyme | HRGMv2_0140_85 | HRGMv2_0140_85_5 | 6443 | 8485 | + | GH13_8 |
| pfam | HRGMv2_0140_85 | HRGMv2_0140_85_6 | 8753 | 9283 | - | Hexapep | Mac | Hexapep_2 |
| pfam | HRGMv2_0140_85 | HRGMv2_0140_85_7 | 9332 | 9706 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_0140_85 | HRGMv2_0140_85_8 | 9843 | 11690 | - | GT83 |
Gene ID: HRGMv2_0140_85_4
Type: TC
Location: 4579 - 6261 (-)
Type: TC
Location: 4579 - 6261 (-)
Gene ID: HRGMv2_0140_85_5
Type: CAZyme
Location: 6443 - 8485 (+)
Type: CAZyme
Location: 6443 - 8485 (+)
Gene ID: HRGMv2_0140_85_6
Type: pfam
Location: 8753 - 9283 (-)
Type: pfam
Location: 8753 - 9283 (-)
Gene ID: HRGMv2_0140_85_7
Type: pfam
Location: 9332 - 9706 (-)
Type: pfam
Location: 9332 - 9706 (-)
Gene ID: HRGMv2_0140_85_8
Type: CAZyme
Location: 9843 - 11690 (-)
Type: CAZyme
Location: 9843 - 11690 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_85_6 | vegetarian > omnivore | 1.13664 | 0.00180 |
| HRGMv2_0140_85_6 | vegetarian > vegan | 1.46437 | 0.01226 |