Cluster: HRGMv2_0140_CGC23
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_07884
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0140_42 | HRGMv2_0140_42_3 | 1444 | 2742 | - | GH29 |
| pfam | HRGMv2_0140_42 | HRGMv2_0140_42_4 | 2814 | 4127 | - | AA_kinase | ACT_9 |
| CAZyme | HRGMv2_0140_42 | HRGMv2_0140_42_5 | 4529 | 6868 | + | GH92 |
| CAZyme | HRGMv2_0140_42 | HRGMv2_0140_42_6 | 7095 | 8474 | + | GH109 |
| pfam | HRGMv2_0140_42 | HRGMv2_0140_42_7 | 8547 | 9629 | + | APH |
| STP | HRGMv2_0140_42 | HRGMv2_0140_42_8 | 9855 | 11780 | - | HATPase_c | HisKA | Response_reg |
| TC | HRGMv2_0140_42 | HRGMv2_0140_42_9 | 12142 | 15459 | + | 1.B.14.6.3 |
| CAZyme | HRGMv2_0140_42 | HRGMv2_0140_42_10 | 15628 | 16581 | + | GT2 |
| CAZyme | HRGMv2_0140_42 | HRGMv2_0140_42_11 | 16588 | 17517 | - | GT2 |
Gene ID: HRGMv2_0140_42_3
Type: CAZyme
Location: 1444 - 2742 (-)
Type: CAZyme
Location: 1444 - 2742 (-)
Gene ID: HRGMv2_0140_42_4
Type: pfam
Location: 2814 - 4127 (-)
Type: pfam
Location: 2814 - 4127 (-)
Gene ID: HRGMv2_0140_42_5
Type: CAZyme
Location: 4529 - 6868 (+)
Type: CAZyme
Location: 4529 - 6868 (+)
Gene ID: HRGMv2_0140_42_6
Type: CAZyme
Location: 7095 - 8474 (+)
Type: CAZyme
Location: 7095 - 8474 (+)
Gene ID: HRGMv2_0140_42_7
Type: pfam
Location: 8547 - 9629 (+)
Type: pfam
Location: 8547 - 9629 (+)
Gene ID: HRGMv2_0140_42_8
Type: STP
Location: 9855 - 11780 (-)
Type: STP
Location: 9855 - 11780 (-)
Gene ID: HRGMv2_0140_42_9
Type: TC
Location: 12142 - 15459 (+)
Type: TC
Location: 12142 - 15459 (+)
Gene ID: HRGMv2_0140_42_10
Type: CAZyme
Location: 15628 - 16581 (+)
Type: CAZyme
Location: 15628 - 16581 (+)
Gene ID: HRGMv2_0140_42_11
Type: CAZyme
Location: 16588 - 17517 (-)
Type: CAZyme
Location: 16588 - 17517 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_42_4 | vegetarian > omnivore | 1.17039 | 0.00180 |
| HRGMv2_0140_42_5 | vegetarian > vegan | 1.01169 | 0.01226 |
| HRGMv2_0140_42_6 | vegetarian > omnivore | 1.44694 | 0.00180 |
| HRGMv2_0140_42_7 | vegan > omnivore | 1.63830 | 0.01548 |
| HRGMv2_0140_42_7 | vegetarian > omnivore | 1.99016 | 0.00180 |
| HRGMv2_0140_42_8 | vegetarian > omnivore | 1.34429 | 0.00180 |
| HRGMv2_0140_42_9 | vegan > omnivore | 1.19311 | 0.01548 |
| HRGMv2_0140_42_9 | vegetarian > omnivore | 1.48329 | 0.00180 |
| HRGMv2_0140_42_11 | vegetarian > omnivore | 1.82108 | 0.00180 |
| HRGMv2_0140_42_11 | vegetarian > vegan | 1.16535 | 0.01226 |