Cluster: HRGMv2_0140_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0140
- CGC Family ID: CGCFAM_07883
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0140_40 | HRGMv2_0140_40_16 | 18115 | 19317 | + | 2.A.1.35.1 |
| pfam | HRGMv2_0140_40 | HRGMv2_0140_40_17 | 19500 | 20069 | + | DUF4251 |
| pfam | HRGMv2_0140_40 | HRGMv2_0140_40_18 | 20240 | 21277 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_0140_40 | HRGMv2_0140_40_19 | 21333 | 22709 | - | GH177 |
Gene ID: HRGMv2_0140_40_16
Type: TC
Location: 18115 - 19317 (+)
Type: TC
Location: 18115 - 19317 (+)
Gene ID: HRGMv2_0140_40_17
Type: pfam
Location: 19500 - 20069 (+)
Type: pfam
Location: 19500 - 20069 (+)
Gene ID: HRGMv2_0140_40_18
Type: pfam
Location: 20240 - 21277 (-)
Type: pfam
Location: 20240 - 21277 (-)
Gene ID: HRGMv2_0140_40_19
Type: CAZyme
Location: 21333 - 22709 (-)
Type: CAZyme
Location: 21333 - 22709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0140_40_16 | vegetarian > omnivore | 1.22048 | 0.00180 |
| HRGMv2_0140_40_18 | vegetarian > omnivore | 1.91223 | 0.00180 |
| HRGMv2_0140_40_18 | vegetarian > vegan | 1.08069 | 0.01226 |
| HRGMv2_0140_40_19 | vegetarian > omnivore | 1.14279 | 0.00180 |