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Cluster: HRGMv2_0140_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0140_14 HRGMv2_0140_14_1 282 1766 - 1.B.17.3.5
TC HRGMv2_0140_14 HRGMv2_0140_14_2 1803 4970 - 2.A.6.2.22
TC HRGMv2_0140_14 HRGMv2_0140_14_3 5098 6300 - 2.A.6.2.4
NULL(UNKNOWN) HRGMv2_0140_14 HRGMv2_0140_14_4 6391 6585 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_5 6613 9732 - GH2
NULL(UNKNOWN) HRGMv2_0140_14 HRGMv2_0140_14_6 10028 10129 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_7 10512 13391 + GH106
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_8 13507 14982 + GH28
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_9 14989 16482 + GH28
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_10 16523 17281 + GH28
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_11 17539 20448 + GH106
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_12 20663 23578 + GH106
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_13 23738 25225 + GH28
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_14 25282 28140 + GH106
CAZyme HRGMv2_0140_14 HRGMv2_0140_14_15 28336 29808 + GH28
NULL(UNKNOWN) HRGMv2_0140_14 HRGMv2_0140_14_16 30152 30640 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0140_14 HRGMv2_0140_14_17 30973 33255 + 9.B.14.3.1
Gene ID: HRGMv2_0140_14_1
Type: TC
Location: 282 - 1766 (-)
Gene ID: HRGMv2_0140_14_2
Type: TC
Location: 1803 - 4970 (-)
Gene ID: HRGMv2_0140_14_3
Type: TC
Location: 5098 - 6300 (-)
Gene ID: HRGMv2_0140_14_4
Type:
Location: 6391 - 6585 (-)
Gene ID: HRGMv2_0140_14_5
Type: CAZyme
Location: 6613 - 9732 (-)
Gene ID: HRGMv2_0140_14_6
Type:
Location: 10028 - 10129 (+)
Gene ID: HRGMv2_0140_14_7
Type: CAZyme
Location: 10512 - 13391 (+)
Gene ID: HRGMv2_0140_14_8
Type: CAZyme
Location: 13507 - 14982 (+)
Gene ID: HRGMv2_0140_14_9
Type: CAZyme
Location: 14989 - 16482 (+)
Gene ID: HRGMv2_0140_14_10
Type: CAZyme
Location: 16523 - 17281 (+)
Gene ID: HRGMv2_0140_14_11
Type: CAZyme
Location: 17539 - 20448 (+)
Gene ID: HRGMv2_0140_14_12
Type: CAZyme
Location: 20663 - 23578 (+)
Gene ID: HRGMv2_0140_14_13
Type: CAZyme
Location: 23738 - 25225 (+)
Gene ID: HRGMv2_0140_14_14
Type: CAZyme
Location: 25282 - 28140 (+)
Gene ID: HRGMv2_0140_14_15
Type: CAZyme
Location: 28336 - 29808 (+)
Gene ID: HRGMv2_0140_14_16
Type:
Location: 30152 - 30640 (-)
Gene ID: HRGMv2_0140_14_17
Type: TC
Location: 30973 - 33255 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes_A
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0140_14_3 vegan > omnivore 1.42475 0.01548
HRGMv2_0140_14_3 vegetarian > omnivore 1.45713 0.00180
HRGMv2_0140_14_4 vegetarian > omnivore 1.89522 0.00180
HRGMv2_0140_14_4 vegan > omnivore 1.98195 0.01548
HRGMv2_0140_14_5 vegetarian > omnivore 1.53925 0.00180
HRGMv2_0140_14_6 vegetarian > vegan 1.01825 0.01226
HRGMv2_0140_14_7 vegetarian > vegan 1.04240 0.01226
HRGMv2_0140_14_8 vegetarian > vegan 1.01264 0.01226
HRGMv2_0140_14_8 vegetarian > omnivore 1.17845 0.00180
HRGMv2_0140_14_9 vegetarian > omnivore 1.21912 0.00180
HRGMv2_0140_14_10 vegetarian > vegan 1.12300 0.01226
HRGMv2_0140_14_10 vegetarian > omnivore 1.79824 0.00180
HRGMv2_0140_14_11 vegetarian > vegan 1.00038 0.01226
HRGMv2_0140_14_11 vegetarian > omnivore 1.10123 0.00180
HRGMv2_0140_14_12 vegan > omnivore 1.15091 0.01548
HRGMv2_0140_14_12 vegetarian > omnivore 1.57762 0.00180
HRGMv2_0140_14_14 vegetarian > omnivore 1.39612 0.00180
HRGMv2_0140_14_15 vegetarian > omnivore 1.56727 0.00180
HRGMv2_0140_14_17 vegetarian > omnivore 1.32100 0.00180
HRGMv2_0140_14_17 vegetarian > vegan 1.11044 0.01226

🧭 Explore Read Mapping of CGC

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