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Genome Details

Selected Rep_genome_ID: Rep_621
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
Rep_621 3,381,481 99.2788% 0% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_621_CGC13 CGCFAM_00001 Yes 10 5 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_621_CGC43 CGCFAM_00001 Yes 5 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_621_CGC32 CGCFAM_00006 Yes 8 5
Rep_621_CGC28 CGCFAM_00016 Yes 11 5 host glycan
Rep_621_CGC4 CGCFAM_00016 Yes 7 3 host glycan
Rep_621_CGC41 CGCFAM_00075 Yes 4 2
Rep_621_CGC29 CGCFAM_00128 Yes 17 6
Rep_621_CGC25 CGCFAM_00265 Yes 4 2 beta-glucan
Rep_621_CGC30 CGCFAM_00404 Yes 8 2
Rep_621_CGC8 CGCFAM_00617 Yes 6 1
Rep_621_CGC1 CGCFAM_00632 Yes 10 1
Rep_621_CGC19 CGCFAM_01387 Yes 4 3
Rep_621_CGC35 CGCFAM_01682 Yes 8 1
Rep_621_CGC15 CGCFAM_02326 Yes 7 4
Rep_621_CGC10 CGCFAM_02447 Yes 7 1
Rep_621_CGC7 CGCFAM_02581 Yes 8 2
Rep_621_CGC31 CGCFAM_03314 Yes 7 2
Rep_621_CGC23 CGCFAM_03400 Yes 15 5
Rep_621_CGC26 CGCFAM_04735 Yes 8 3
Rep_621_CGC37 CGCFAM_04815 Yes 3 1
Rep_621_CGC12 CGCFAM_05173 Yes 5 2
Rep_621_CGC9 CGCFAM_05735 Yes 3 1
Rep_621_CGC33 CGCFAM_09535 Yes 8 3
Top CAZyme Families