dbCAN Logo

Cluster: Rep_621_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_621_c_0 Rep_621_c_0_1 604 1857 - GH171
pfam Rep_621_c_0 Rep_621_c_0_2 2088 3200 - RF-1 | PCRF
TC Rep_621_c_0 Rep_621_c_0_3 3238 3873 - 2.A.115.2.14
TC Rep_621_c_0 Rep_621_c_0_4 3882 5285 - 2.A.66.1.32
NULL(UNKNOWN) Rep_621_c_0 Rep_621_c_0_5 5296 5787 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_621_c_0 Rep_621_c_0_6 5831 7306 - tRNA-synt_1e | DALR_2 | tRNA-synt_1g | CysS_C
TC Rep_621_c_0 Rep_621_c_0_7 7495 9123 + 1.I.1.1.3
pfam Rep_621_c_0 Rep_621_c_0_8 9450 12683 + TMEM260-like
TF Rep_621_c_0 Rep_621_c_0_9 12943 13218 + HTH_3
TC Rep_621_c_0 Rep_621_c_0_10 13326 15002 - 4.C.1.1.14
Gene ID: Rep_621_c_0_1
Type: CAZyme
Location: 604 - 1857 (-)
Gene ID: Rep_621_c_0_2
Type: pfam
Location: 2088 - 3200 (-)
Gene ID: Rep_621_c_0_3
Type: TC
Location: 3238 - 3873 (-)
Gene ID: Rep_621_c_0_4
Type: TC
Location: 3882 - 5285 (-)
Gene ID: Rep_621_c_0_5
Type:
Location: 5296 - 5787 (-)
Gene ID: Rep_621_c_0_6
Type: pfam
Location: 5831 - 7306 (-)
Gene ID: Rep_621_c_0_7
Type: TC
Location: 7495 - 9123 (+)
Gene ID: Rep_621_c_0_8
Type: pfam
Location: 9450 - 12683 (+)
Gene ID: Rep_621_c_0_9
Type: TF
Location: 12943 - 13218 (+)
Gene ID: Rep_621_c_0_10
Type: TC
Location: 13326 - 15002 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_621_c_0_9 omnivore > vegan 1.06023 0.04779

🧭 Explore Read Mapping of CGC

← Back to Cluster List