Cluster: Rep_621_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_00016
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_621_c_3 | Rep_621_c_3_42 | 49810 | 53145 | + | 1.B.14.6.13 |
| TC | Rep_621_c_3 | Rep_621_c_3_43 | 53159 | 54751 | + | 8.A.46.2.2 |
| pfam | Rep_621_c_3 | Rep_621_c_3_44 | 54757 | 55674 | + | GH18_BT1044-like |
| pfam | Rep_621_c_3 | Rep_621_c_3_45 | 55683 | 57047 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_621_c_3 | Rep_621_c_3_46 | 57050 | 58675 | + | GH18 |
| CAZyme | Rep_621_c_3 | Rep_621_c_3_47 | 58798 | 59778 | + | GH18 |
| CAZyme | Rep_621_c_3 | Rep_621_c_3_48 | 60135 | 61667 | - | CBM91 | GH43_8 |
Gene ID: Rep_621_c_3_42
Type: TC
Location: 49810 - 53145 (+)
Type: TC
Location: 49810 - 53145 (+)
Gene ID: Rep_621_c_3_43
Type: TC
Location: 53159 - 54751 (+)
Type: TC
Location: 53159 - 54751 (+)
Gene ID: Rep_621_c_3_44
Type: pfam
Location: 54757 - 55674 (+)
Type: pfam
Location: 54757 - 55674 (+)
Gene ID: Rep_621_c_3_45
Type: pfam
Location: 55683 - 57047 (+)
Type: pfam
Location: 55683 - 57047 (+)
Gene ID: Rep_621_c_3_46
Type: CAZyme
Location: 57050 - 58675 (+)
Type: CAZyme
Location: 57050 - 58675 (+)
Gene ID: Rep_621_c_3_47
Type: CAZyme
Location: 58798 - 59778 (+)
Type: CAZyme
Location: 58798 - 59778 (+)
Gene ID: Rep_621_c_3_48
Type: CAZyme
Location: 60135 - 61667 (-)
Type: CAZyme
Location: 60135 - 61667 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_3_48 | omnivore > vegan | 1.26405 | 0.03486 |