Cluster: Rep_621_CGC33
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_09535
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_621_c_43 | Rep_621_c_43_37 | 47309 | 48817 | - | 8.A.46.2.2 |
| TC | Rep_621_c_43 | Rep_621_c_43_38 | 48826 | 52038 | - | 1.B.14.6.2 |
| CAZyme | Rep_621_c_43 | Rep_621_c_43_39 | 52076 | 54283 | - | GH3 |
| CAZyme | Rep_621_c_43 | Rep_621_c_43_40 | 54313 | 55560 | - | GH33 |
| CAZyme | Rep_621_c_43 | Rep_621_c_43_41 | 55589 | 56776 | - | GH33 |
| pfam | Rep_621_c_43 | Rep_621_c_43_42 | 56850 | 57587 | - | HpcH_HpaI |
| pfam | Rep_621_c_43 | Rep_621_c_43_43 | 57597 | 58706 | - | APH |
| TC | Rep_621_c_43 | Rep_621_c_43_44 | 58708 | 59700 | - | 2.A.28.2.4 |
Gene ID: Rep_621_c_43_37
Type: TC
Location: 47309 - 48817 (-)
Type: TC
Location: 47309 - 48817 (-)
Gene ID: Rep_621_c_43_38
Type: TC
Location: 48826 - 52038 (-)
Type: TC
Location: 48826 - 52038 (-)
Gene ID: Rep_621_c_43_39
Type: CAZyme
Location: 52076 - 54283 (-)
Type: CAZyme
Location: 52076 - 54283 (-)
Gene ID: Rep_621_c_43_40
Type: CAZyme
Location: 54313 - 55560 (-)
Type: CAZyme
Location: 54313 - 55560 (-)
Gene ID: Rep_621_c_43_41
Type: CAZyme
Location: 55589 - 56776 (-)
Type: CAZyme
Location: 55589 - 56776 (-)
Gene ID: Rep_621_c_43_42
Type: pfam
Location: 56850 - 57587 (-)
Type: pfam
Location: 56850 - 57587 (-)
Gene ID: Rep_621_c_43_43
Type: pfam
Location: 57597 - 58706 (-)
Type: pfam
Location: 57597 - 58706 (-)
Gene ID: Rep_621_c_43_44
Type: TC
Location: 58708 - 59700 (-)
Type: TC
Location: 58708 - 59700 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.