Cluster: Rep_621_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_621_c_11 | Rep_621_c_11_45 | 56175 | 58382 | + | GH36 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_46 | 58635 | 60062 | - | GH140 |
| NULL(UNKNOWN) | Rep_621_c_11 | Rep_621_c_11_47 | 60148 | 60681 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_621_c_11 | Rep_621_c_11_48 | 60699 | 62357 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_621_c_11 | Rep_621_c_11_49 | 62384 | 65221 | - | 1.B.14.6.1 |
| pfam | Rep_621_c_11 | Rep_621_c_11_50 | 65263 | 67014 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_621_c_11 | Rep_621_c_11_51 | 67044 | 70340 | - | 1.B.14.6.1 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_52 | 70599 | 72008 | - | GH5 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_53 | 72222 | 75491 | + | GH2 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_54 | 75495 | 77501 | + | GH164 |
Gene ID: Rep_621_c_11_45
Type: CAZyme
Location: 56175 - 58382 (+)
Type: CAZyme
Location: 56175 - 58382 (+)
Gene ID: Rep_621_c_11_46
Type: CAZyme
Location: 58635 - 60062 (-)
Type: CAZyme
Location: 58635 - 60062 (-)
Gene ID: Rep_621_c_11_47
Type:
Location: 60148 - 60681 (-)
Type:
Location: 60148 - 60681 (-)
Gene ID: Rep_621_c_11_48
Type: pfam
Location: 60699 - 62357 (-)
Type: pfam
Location: 60699 - 62357 (-)
Gene ID: Rep_621_c_11_49
Type: TC
Location: 62384 - 65221 (-)
Type: TC
Location: 62384 - 65221 (-)
Gene ID: Rep_621_c_11_50
Type: pfam
Location: 65263 - 67014 (-)
Type: pfam
Location: 65263 - 67014 (-)
Gene ID: Rep_621_c_11_51
Type: TC
Location: 67044 - 70340 (-)
Type: TC
Location: 67044 - 70340 (-)
Gene ID: Rep_621_c_11_52
Type: CAZyme
Location: 70599 - 72008 (-)
Type: CAZyme
Location: 70599 - 72008 (-)
Gene ID: Rep_621_c_11_53
Type: CAZyme
Location: 72222 - 75491 (+)
Type: CAZyme
Location: 72222 - 75491 (+)
Gene ID: Rep_621_c_11_54
Type: CAZyme
Location: 75495 - 77501 (+)
Type: CAZyme
Location: 75495 - 77501 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.