Cluster: Rep_621_CGC31
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_03314
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_621_c_37 | Rep_621_c_37_1 | 1 | 1719 | + | GH127 |
| CAZyme | Rep_621_c_37 | Rep_621_c_37_2 | 1789 | 5007 | + | GH106 |
| TC | Rep_621_c_37 | Rep_621_c_37_3 | 5478 | 8588 | + | 1.B.14.6.1 |
| TC | Rep_621_c_37 | Rep_621_c_37_4 | 8600 | 10246 | + | 8.A.46.1.5 |
| NULL(UNKNOWN) | Rep_621_c_37 | Rep_621_c_37_5 | 10323 | 10736 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| peptidase | Rep_621_c_37 | Rep_621_c_37_6 | 10788 | 13580 | - | M06.UPW |
| TC | Rep_621_c_37 | Rep_621_c_37_7 | 13988 | 17287 | + | 1.B.14.6.1 |
Gene ID: Rep_621_c_37_1
Type: CAZyme
Location: 1 - 1719 (+)
Type: CAZyme
Location: 1 - 1719 (+)
Gene ID: Rep_621_c_37_2
Type: CAZyme
Location: 1789 - 5007 (+)
Type: CAZyme
Location: 1789 - 5007 (+)
Gene ID: Rep_621_c_37_3
Type: TC
Location: 5478 - 8588 (+)
Type: TC
Location: 5478 - 8588 (+)
Gene ID: Rep_621_c_37_4
Type: TC
Location: 8600 - 10246 (+)
Type: TC
Location: 8600 - 10246 (+)
Gene ID: Rep_621_c_37_5
Type:
Location: 10323 - 10736 (-)
Type:
Location: 10323 - 10736 (-)
Gene ID: Rep_621_c_37_6
Type: peptidase
Location: 10788 - 13580 (-)
Type: peptidase
Location: 10788 - 13580 (-)
Gene ID: Rep_621_c_37_7
Type: TC
Location: 13988 - 17287 (+)
Type: TC
Location: 13988 - 17287 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_37_1 | vegetarian > omnivore | 6.04982 | 0.00701 |
| Rep_621_c_37_1 | vegetarian > vegan | 2.40739 | 0.00688 |
| Rep_621_c_37_2 | vegetarian > omnivore | 4.57144 | 0.00701 |
| Rep_621_c_37_2 | vegetarian > vegan | 2.33818 | 0.00688 |
| Rep_621_c_37_7 | vegan > omnivore | 3.59648 | 0.00029 |
| Rep_621_c_37_7 | vegetarian > omnivore | 5.05629 | 0.00701 |
| Rep_621_c_37_7 | vegetarian > vegan | 1.45981 | 0.00688 |