Cluster: Rep_621_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_02447
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_621_c_8 | Rep_621_c_8_86 | 100485 | 102464 | - | CBM51 | GH27 |
| pfam | Rep_621_c_8 | Rep_621_c_8_87 | 102485 | 102961 | - | NfeD |
| NULL(UNKNOWN) | Rep_621_c_8 | Rep_621_c_8_88 | 103011 | 104576 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_621_c_8 | Rep_621_c_8_89 | 104564 | 106009 | - | 2.A.38.1.1 |
| NULL(UNKNOWN) | Rep_621_c_8 | Rep_621_c_8_90 | 106015 | 106800 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_621_c_8 | Rep_621_c_8_91 | 106837 | 108135 | - | UPF0004 | Radical_SAM |
| TC | Rep_621_c_8 | Rep_621_c_8_92 | 108237 | 109070 | + | 3.A.1.15.7 |
Gene ID: Rep_621_c_8_86
Type: CAZyme
Location: 100485 - 102464 (-)
Type: CAZyme
Location: 100485 - 102464 (-)
Gene ID: Rep_621_c_8_87
Type: pfam
Location: 102485 - 102961 (-)
Type: pfam
Location: 102485 - 102961 (-)
Gene ID: Rep_621_c_8_88
Type:
Location: 103011 - 104576 (-)
Type:
Location: 103011 - 104576 (-)
Gene ID: Rep_621_c_8_89
Type: TC
Location: 104564 - 106009 (-)
Type: TC
Location: 104564 - 106009 (-)
Gene ID: Rep_621_c_8_90
Type:
Location: 106015 - 106800 (-)
Type:
Location: 106015 - 106800 (-)
Gene ID: Rep_621_c_8_91
Type: pfam
Location: 106837 - 108135 (-)
Type: pfam
Location: 106837 - 108135 (-)
Gene ID: Rep_621_c_8_92
Type: TC
Location: 108237 - 109070 (+)
Type: TC
Location: 108237 - 109070 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_8_86 | omnivore > vegan | 1.07293 | 0.03486 |