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Cluster: Rep_621_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_621_c_11 Rep_621_c_11_36 44248 44934 + CE4
pfam Rep_621_c_11 Rep_621_c_11_37 44931 45548 + LolA
pfam Rep_621_c_11 Rep_621_c_11_38 45566 45937 + FabA
CAZyme Rep_621_c_11 Rep_621_c_11_39 45934 47091 + GT2
TC Rep_621_c_11 Rep_621_c_11_40 47084 50926 + 2.A.6.7.3
Gene ID: Rep_621_c_11_36
Type: CAZyme
Location: 44248 - 44934 (+)
Gene ID: Rep_621_c_11_37
Type: pfam
Location: 44931 - 45548 (+)
Gene ID: Rep_621_c_11_38
Type: pfam
Location: 45566 - 45937 (+)
Gene ID: Rep_621_c_11_39
Type: CAZyme
Location: 45934 - 47091 (+)
Gene ID: Rep_621_c_11_40
Type: TC
Location: 47084 - 50926 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_621_c_11_36 omnivore > vegan 1.33900 0.03486
Rep_621_c_11_36 vegetarian > vegan 1.10966 0.00688
Rep_621_c_11_38 omnivore > vegan 1.21536 0.03486

🧭 Explore Read Mapping of CGC

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