Cluster: Rep_621_CGC29
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_00128
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_621_c_29 | Rep_621_c_29_102 | 138398 | 140404 | - | 2.A.67.4.2 |
| NULL(UNKNOWN) | Rep_621_c_29 | Rep_621_c_29_103 | 140405 | 140812 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_621_c_29 | Rep_621_c_29_104 | 140938 | 141264 | - | MazG |
| CAZyme | Rep_621_c_29 | Rep_621_c_29_105 | 141607 | 143802 | - | GH97 |
| CAZyme | Rep_621_c_29 | Rep_621_c_29_106 | 143814 | 145691 | - | GH13_46 |
| CAZyme | Rep_621_c_29 | Rep_621_c_29_107 | 145868 | 147205 | - | GH13 |
| CAZyme | Rep_621_c_29 | Rep_621_c_29_108 | 147216 | 149534 | - | GH13_36 |
| pfam | Rep_621_c_29 | Rep_621_c_29_109 | 149641 | 151455 | - | SusE | SusF_SusE |
| TC | Rep_621_c_29 | Rep_621_c_29_110 | 151479 | 153137 | - | 8.A.46.1.1 |
| TC | Rep_621_c_29 | Rep_621_c_29_111 | 153151 | 156174 | - | 1.B.14.6.1 |
| TC | Rep_621_c_29 | Rep_621_c_29_112 | 156236 | 157546 | - | 2.A.2.6.2 |
| TC | Rep_621_c_29 | Rep_621_c_29_113 | 157768 | 159150 | + | 8.A.59.2.1 |
| TF | Rep_621_c_29 | Rep_621_c_29_114 | 159152 | 159904 | + | LytTR |
| CAZyme | Rep_621_c_29 | Rep_621_c_29_115 | 160134 | 162734 | - | GH77 |
| peptidase | Rep_621_c_29 | Rep_621_c_29_116 | 162818 | 163765 | - | S33.UPW |
| pfam | Rep_621_c_29 | Rep_621_c_29_117 | 164007 | 165251 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | Rep_621_c_29 | Rep_621_c_29_118 | 165253 | 166314 | - | GH43_26 |
Gene ID: Rep_621_c_29_102
Type: TC
Location: 138398 - 140404 (-)
Type: TC
Location: 138398 - 140404 (-)
Gene ID: Rep_621_c_29_103
Type:
Location: 140405 - 140812 (-)
Type:
Location: 140405 - 140812 (-)
Gene ID: Rep_621_c_29_104
Type: pfam
Location: 140938 - 141264 (-)
Type: pfam
Location: 140938 - 141264 (-)
Gene ID: Rep_621_c_29_105
Type: CAZyme
Location: 141607 - 143802 (-)
Type: CAZyme
Location: 141607 - 143802 (-)
Gene ID: Rep_621_c_29_106
Type: CAZyme
Location: 143814 - 145691 (-)
Type: CAZyme
Location: 143814 - 145691 (-)
Gene ID: Rep_621_c_29_107
Type: CAZyme
Location: 145868 - 147205 (-)
Type: CAZyme
Location: 145868 - 147205 (-)
Gene ID: Rep_621_c_29_108
Type: CAZyme
Location: 147216 - 149534 (-)
Type: CAZyme
Location: 147216 - 149534 (-)
Gene ID: Rep_621_c_29_109
Type: pfam
Location: 149641 - 151455 (-)
Type: pfam
Location: 149641 - 151455 (-)
Gene ID: Rep_621_c_29_110
Type: TC
Location: 151479 - 153137 (-)
Type: TC
Location: 151479 - 153137 (-)
Gene ID: Rep_621_c_29_111
Type: TC
Location: 153151 - 156174 (-)
Type: TC
Location: 153151 - 156174 (-)
Gene ID: Rep_621_c_29_112
Type: TC
Location: 156236 - 157546 (-)
Type: TC
Location: 156236 - 157546 (-)
Gene ID: Rep_621_c_29_113
Type: TC
Location: 157768 - 159150 (+)
Type: TC
Location: 157768 - 159150 (+)
Gene ID: Rep_621_c_29_114
Type: TF
Location: 159152 - 159904 (+)
Type: TF
Location: 159152 - 159904 (+)
Gene ID: Rep_621_c_29_115
Type: CAZyme
Location: 160134 - 162734 (-)
Type: CAZyme
Location: 160134 - 162734 (-)
Gene ID: Rep_621_c_29_116
Type: peptidase
Location: 162818 - 163765 (-)
Type: peptidase
Location: 162818 - 163765 (-)
Gene ID: Rep_621_c_29_117
Type: pfam
Location: 164007 - 165251 (-)
Type: pfam
Location: 164007 - 165251 (-)
Gene ID: Rep_621_c_29_118
Type: CAZyme
Location: 165253 - 166314 (-)
Type: CAZyme
Location: 165253 - 166314 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_29_118 | omnivore > vegan | 1.30456 | 0.03486 |