Cluster: Rep_621_CGC19
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_01387
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_621_c_14 | Rep_621_c_14_14 | 21738 | 23969 | + | GH2 |
| CAZyme | Rep_621_c_14 | Rep_621_c_14_15 | 23974 | 25440 | + | CE20 |
| TC | Rep_621_c_14 | Rep_621_c_14_16 | 25448 | 26842 | + | 2.A.2.3.6 |
| CAZyme | Rep_621_c_14 | Rep_621_c_14_17 | 26936 | 29248 | - | GT51 |
Gene ID: Rep_621_c_14_14
Type: CAZyme
Location: 21738 - 23969 (+)
Type: CAZyme
Location: 21738 - 23969 (+)
Gene ID: Rep_621_c_14_15
Type: CAZyme
Location: 23974 - 25440 (+)
Type: CAZyme
Location: 23974 - 25440 (+)
Gene ID: Rep_621_c_14_16
Type: TC
Location: 25448 - 26842 (+)
Type: TC
Location: 25448 - 26842 (+)
Gene ID: Rep_621_c_14_17
Type: CAZyme
Location: 26936 - 29248 (-)
Type: CAZyme
Location: 26936 - 29248 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_621_c_14_14 | vegetarian > omnivore | 4.19356 | 0.00701 |
| Rep_621_c_14_14 | vegetarian > vegan | 2.24805 | 0.00688 |
| Rep_621_c_14_15 | vegan > omnivore | 4.03618 | 0.00029 |
| Rep_621_c_14_15 | vegetarian > omnivore | 5.15634 | 0.00701 |
| Rep_621_c_14_15 | vegetarian > vegan | 1.12016 | 0.00688 |
| Rep_621_c_14_16 | vegetarian > omnivore | 3.59273 | 0.01136 |
| Rep_621_c_14_16 | vegetarian > vegan | 1.79492 | 0.00688 |