Cluster: Rep_621_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_621
- CGC Family ID: CGCFAM_02326
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_621_c_11 | Rep_621_c_11_65 | 94448 | 97255 | - | GH2 |
| TF | Rep_621_c_11 | Rep_621_c_11_66 | 97448 | 98329 | + | HTH_AraC |
| NULL(UNKNOWN) | Rep_621_c_11 | Rep_621_c_11_67 | 98686 | 98892 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_68 | 98858 | 99967 | + | GH5_7 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_69 | 100130 | 101356 | + | GH27 |
| CAZyme | Rep_621_c_11 | Rep_621_c_11_70 | 101353 | 102627 | + | CE7 |
| TC | Rep_621_c_11 | Rep_621_c_11_71 | 102639 | 105830 | + | 1.B.14.6.1 |
Gene ID: Rep_621_c_11_65
Type: CAZyme
Location: 94448 - 97255 (-)
Type: CAZyme
Location: 94448 - 97255 (-)
Gene ID: Rep_621_c_11_66
Type: TF
Location: 97448 - 98329 (+)
Type: TF
Location: 97448 - 98329 (+)
Gene ID: Rep_621_c_11_67
Type:
Location: 98686 - 98892 (+)
Type:
Location: 98686 - 98892 (+)
Gene ID: Rep_621_c_11_68
Type: CAZyme
Location: 98858 - 99967 (+)
Type: CAZyme
Location: 98858 - 99967 (+)
Gene ID: Rep_621_c_11_69
Type: CAZyme
Location: 100130 - 101356 (+)
Type: CAZyme
Location: 100130 - 101356 (+)
Gene ID: Rep_621_c_11_70
Type: CAZyme
Location: 101353 - 102627 (+)
Type: CAZyme
Location: 101353 - 102627 (+)
Gene ID: Rep_621_c_11_71
Type: TC
Location: 102639 - 105830 (+)
Type: TC
Location: 102639 - 105830 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.