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Genome Details

Selected Rep_genome_ID: Rep_566
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Tannerellaceae
→
Genus
Parabacteroides
→
Species
Parabacteroides johnsonii
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
Rep_566 4,786,413 98.3654% 0% NA NA WIS
SPMP21_bin.30 4,519,690 97.16% 0.58% Singapore Asia SPMP
SW166_bin.12 4,052,619 95.38% 0% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_566_CGC26 CGCFAM_00001 Yes 8 4 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_566_CGC8 CGCFAM_00001 Yes 6 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_566_CGC70 CGCFAM_00007 Yes 6 2
Rep_566_CGC3 CGCFAM_00267 Yes 5 2
Rep_566_CGC59 CGCFAM_00365 Yes 12 3 host glycan
Rep_566_CGC31 CGCFAM_00388 Yes 3 1
Rep_566_CGC35 CGCFAM_00480 Yes 4 2 pectin/host glycan
Rep_566_CGC40 CGCFAM_00828 Yes 5 2
Rep_566_CGC72 CGCFAM_01021 Yes 16 6
Rep_566_CGC21 CGCFAM_01173 Yes 10 3
Rep_566_CGC51 CGCFAM_01199 Yes 4 2
Rep_566_CGC33 CGCFAM_01288 Yes 7 3
Rep_566_CGC75 CGCFAM_01403 Yes 9 1
Rep_566_CGC69 CGCFAM_01404 Yes 9 2
Rep_566_CGC53 CGCFAM_01605 Yes 4 1
Rep_566_CGC34 CGCFAM_02567 Yes 10 3
Rep_566_CGC37 CGCFAM_02784 Yes 8 3
Rep_566_CGC32 CGCFAM_03275 Yes 11 5
Rep_566_CGC42 CGCFAM_03438 Yes 10 4
Rep_566_CGC38 CGCFAM_03620 Yes 5 2
Rep_566_CGC13 CGCFAM_04479 Yes 11 5
Rep_566_CGC63 CGCFAM_07636 Yes 12 3
Rep_566_CGC48 CGCFAM_08400 Yes 9 2
Rep_566_CGC44 CGCFAM_08991 Yes 9 3
Rep_566_CGC52 CGCFAM_11009 Yes 9 1
Top CAZyme Families