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Cluster: Rep_566_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_566_c_2 Rep_566_c_2_280 322677 324107 - 2.A.62.1.3
TC Rep_566_c_2 Rep_566_c_2_281 324454 326337 + 3.A.1.120.6
TC Rep_566_c_2 Rep_566_c_2_282 326343 327518 + 2.A.1.46.5
pfam Rep_566_c_2 Rep_566_c_2_283 327526 328059 + DNA_binding_1 | Methyltransf_1N
NULL(UNKNOWN) Rep_566_c_2 Rep_566_c_2_284 328370 328726 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_566_c_2 Rep_566_c_2_285 328864 329763 + 2.A.115.1.1
STP Rep_566_c_2 Rep_566_c_2_286 329873 331072 + Aminotran_1_2
TC Rep_566_c_2 Rep_566_c_2_287 331160 332404 + 3.A.1.125.1
CAZyme Rep_566_c_2 Rep_566_c_2_288 332445 333626 - GT2
Gene ID: Rep_566_c_2_280
Type: TC
Location: 322677 - 324107 (-)
Gene ID: Rep_566_c_2_281
Type: TC
Location: 324454 - 326337 (+)
Gene ID: Rep_566_c_2_282
Type: TC
Location: 326343 - 327518 (+)
Gene ID: Rep_566_c_2_283
Type: pfam
Location: 327526 - 328059 (+)
Gene ID: Rep_566_c_2_284
Type:
Location: 328370 - 328726 (+)
Gene ID: Rep_566_c_2_285
Type: TC
Location: 328864 - 329763 (+)
Gene ID: Rep_566_c_2_286
Type: STP
Location: 329873 - 331072 (+)
Gene ID: Rep_566_c_2_287
Type: TC
Location: 331160 - 332404 (+)
Gene ID: Rep_566_c_2_288
Type: CAZyme
Location: 332445 - 333626 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_566_c_2_287 vegetarian > omnivore 1.09966 0.00110

🧭 Explore Read Mapping of CGC

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