Cluster: Rep_566_CGC72
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_566
- CGC Family ID: CGCFAM_01021
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_566_c_4 | Rep_566_c_4_432 | 471907 | 473067 | - | CE9 |
| CAZyme | Rep_566_c_4 | Rep_566_c_4_433 | 473086 | 474252 | - | CE9 |
| TC | Rep_566_c_4 | Rep_566_c_4_434 | 474606 | 476552 | - | 3.A.1.121.4 |
| sulfatase | Rep_566_c_4 | Rep_566_c_4_435 | 476630 | 478015 | - | S1_19 |
| CAZyme | Rep_566_c_4 | Rep_566_c_4_436 | 478039 | 479106 | - | GH159 |
| CAZyme | Rep_566_c_4 | Rep_566_c_4_437 | 479118 | 480098 | - | CBM32 |
| NULL(UNKNOWN) | Rep_566_c_4 | Rep_566_c_4_438 | 480095 | 480454 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_566_c_4 | Rep_566_c_4_439 | 480414 | 482030 | - | GH2 |
| pfam | Rep_566_c_4 | Rep_566_c_4_440 | 482124 | 483746 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_566_c_4 | Rep_566_c_4_441 | 483786 | 486905 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_566_c_4 | Rep_566_c_4_442 | 487654 | 487830 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_566_c_4 | Rep_566_c_4_443 | 487978 | 488232 | + | CarbopepD_reg_2 |
| TC | Rep_566_c_4 | Rep_566_c_4_444 | 488256 | 491081 | + | 1.B.14.6.1 |
| pfam | Rep_566_c_4 | Rep_566_c_4_445 | 491093 | 492874 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_566_c_4 | Rep_566_c_4_446 | 493082 | 493636 | + | DUF3332 |
| CAZyme | Rep_566_c_4 | Rep_566_c_4_447 | 493737 | 497114 | + | GH2 |
Gene ID: Rep_566_c_4_432
Type: CAZyme
Location: 471907 - 473067 (-)
Type: CAZyme
Location: 471907 - 473067 (-)
Gene ID: Rep_566_c_4_433
Type: CAZyme
Location: 473086 - 474252 (-)
Type: CAZyme
Location: 473086 - 474252 (-)
Gene ID: Rep_566_c_4_434
Type: TC
Location: 474606 - 476552 (-)
Type: TC
Location: 474606 - 476552 (-)
Gene ID: Rep_566_c_4_435
Type: sulfatase
Location: 476630 - 478015 (-)
Type: sulfatase
Location: 476630 - 478015 (-)
Gene ID: Rep_566_c_4_436
Type: CAZyme
Location: 478039 - 479106 (-)
Type: CAZyme
Location: 478039 - 479106 (-)
Gene ID: Rep_566_c_4_437
Type: CAZyme
Location: 479118 - 480098 (-)
Type: CAZyme
Location: 479118 - 480098 (-)
Gene ID: Rep_566_c_4_438
Type:
Location: 480095 - 480454 (-)
Type:
Location: 480095 - 480454 (-)
Gene ID: Rep_566_c_4_439
Type: CAZyme
Location: 480414 - 482030 (-)
Type: CAZyme
Location: 480414 - 482030 (-)
Gene ID: Rep_566_c_4_440
Type: pfam
Location: 482124 - 483746 (-)
Type: pfam
Location: 482124 - 483746 (-)
Gene ID: Rep_566_c_4_441
Type: TC
Location: 483786 - 486905 (-)
Type: TC
Location: 483786 - 486905 (-)
Gene ID: Rep_566_c_4_442
Type:
Location: 487654 - 487830 (+)
Type:
Location: 487654 - 487830 (+)
Gene ID: Rep_566_c_4_443
Type: pfam
Location: 487978 - 488232 (+)
Type: pfam
Location: 487978 - 488232 (+)
Gene ID: Rep_566_c_4_444
Type: TC
Location: 488256 - 491081 (+)
Type: TC
Location: 488256 - 491081 (+)
Gene ID: Rep_566_c_4_445
Type: pfam
Location: 491093 - 492874 (+)
Type: pfam
Location: 491093 - 492874 (+)
Gene ID: Rep_566_c_4_446
Type: pfam
Location: 493082 - 493636 (+)
Type: pfam
Location: 493082 - 493636 (+)
Gene ID: Rep_566_c_4_447
Type: CAZyme
Location: 493737 - 497114 (+)
Type: CAZyme
Location: 493737 - 497114 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.