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Cluster: Rep_566_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_566_c_1 Rep_566_c_1_166 165617 166834 - GH154
CAZyme Rep_566_c_1 Rep_566_c_1_167 166844 168040 - GH88
NULL(UNKNOWN) Rep_566_c_1 Rep_566_c_1_168 168430 168591 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_566_c_1 Rep_566_c_1_169 168597 169787 + 3.A.1.7.5
TC Rep_566_c_1 Rep_566_c_1_170 169796 170683 + 3.A.1.7.2
TC Rep_566_c_1 Rep_566_c_1_171 170695 171447 + 3.A.1.7.1
pfam Rep_566_c_1 Rep_566_c_1_172 171549 172226 + PhoU | PhoU
pfam Rep_566_c_1 Rep_566_c_1_173 172266 173468 + Porin_O_P
CAZyme Rep_566_c_1 Rep_566_c_1_174 173469 175898 - GH95
TC Rep_566_c_1 Rep_566_c_1_175 176507 178354 - 3.A.1.135.5
Gene ID: Rep_566_c_1_166
Type: CAZyme
Location: 165617 - 166834 (-)
Gene ID: Rep_566_c_1_167
Type: CAZyme
Location: 166844 - 168040 (-)
Gene ID: Rep_566_c_1_168
Type:
Location: 168430 - 168591 (+)
Gene ID: Rep_566_c_1_169
Type: TC
Location: 168597 - 169787 (+)
Gene ID: Rep_566_c_1_170
Type: TC
Location: 169796 - 170683 (+)
Gene ID: Rep_566_c_1_171
Type: TC
Location: 170695 - 171447 (+)
Gene ID: Rep_566_c_1_172
Type: pfam
Location: 171549 - 172226 (+)
Gene ID: Rep_566_c_1_173
Type: pfam
Location: 172266 - 173468 (+)
Gene ID: Rep_566_c_1_174
Type: CAZyme
Location: 173469 - 175898 (-)
Gene ID: Rep_566_c_1_175
Type: TC
Location: 176507 - 178354 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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