Cluster: Rep_566_CGC59
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: Rep_566
- CGC Family ID: CGCFAM_00365
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_566_c_3 | Rep_566_c_3_165 | 200730 | 201941 | - | GH88 |
| CAZyme | Rep_566_c_3 | Rep_566_c_3_166 | 201949 | 203877 | - | PL33_1 |
| sulfatase | Rep_566_c_3 | Rep_566_c_3_167 | 203998 | 204417 | - | S1_7 |
| sulfatase | Rep_566_c_3 | Rep_566_c_3_168 | 204374 | 205426 | - | S1_7 |
| TC | Rep_566_c_3 | Rep_566_c_3_169 | 205521 | 207239 | - | 8.A.46.1.5 |
| TC | Rep_566_c_3 | Rep_566_c_3_170 | 207273 | 210500 | - | 1.B.14.6.1 |
| TC | Rep_566_c_3 | Rep_566_c_3_171 | 211456 | 211887 | + | 1.B.14.6.1 |
| TC | Rep_566_c_3 | Rep_566_c_3_172 | 211890 | 214241 | + | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_566_c_3 | Rep_566_c_3_173 | 214184 | 214690 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_566_c_3 | Rep_566_c_3_174 | 214704 | 216419 | + | 8.A.46.1.3 |
| sulfatase | Rep_566_c_3 | Rep_566_c_3_175 | 216627 | 218210 | + | S1_27 |
| CAZyme | Rep_566_c_3 | Rep_566_c_3_176 | 218383 | 220419 | - | GH2 |
Gene ID: Rep_566_c_3_165
Type: CAZyme
Location: 200730 - 201941 (-)
Type: CAZyme
Location: 200730 - 201941 (-)
Gene ID: Rep_566_c_3_166
Type: CAZyme
Location: 201949 - 203877 (-)
Type: CAZyme
Location: 201949 - 203877 (-)
Gene ID: Rep_566_c_3_167
Type: sulfatase
Location: 203998 - 204417 (-)
Type: sulfatase
Location: 203998 - 204417 (-)
Gene ID: Rep_566_c_3_168
Type: sulfatase
Location: 204374 - 205426 (-)
Type: sulfatase
Location: 204374 - 205426 (-)
Gene ID: Rep_566_c_3_169
Type: TC
Location: 205521 - 207239 (-)
Type: TC
Location: 205521 - 207239 (-)
Gene ID: Rep_566_c_3_170
Type: TC
Location: 207273 - 210500 (-)
Type: TC
Location: 207273 - 210500 (-)
Gene ID: Rep_566_c_3_171
Type: TC
Location: 211456 - 211887 (+)
Type: TC
Location: 211456 - 211887 (+)
Gene ID: Rep_566_c_3_172
Type: TC
Location: 211890 - 214241 (+)
Type: TC
Location: 211890 - 214241 (+)
Gene ID: Rep_566_c_3_173
Type:
Location: 214184 - 214690 (+)
Type:
Location: 214184 - 214690 (+)
Gene ID: Rep_566_c_3_174
Type: TC
Location: 214704 - 216419 (+)
Type: TC
Location: 214704 - 216419 (+)
Gene ID: Rep_566_c_3_175
Type: sulfatase
Location: 216627 - 218210 (+)
Type: sulfatase
Location: 216627 - 218210 (+)
Gene ID: Rep_566_c_3_176
Type: CAZyme
Location: 218383 - 220419 (-)
Type: CAZyme
Location: 218383 - 220419 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_566_c_3_166 | vegetarian > omnivore | 1.24958 | 0.00110 |
| Rep_566_c_3_172 | vegetarian > omnivore | 1.14788 | 0.00110 |
| Rep_566_c_3_175 | vegetarian > vegan | 1.07071 | 0.00565 |