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Cluster: Rep_566_CGC63

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_566_c_3 Rep_566_c_3_270 333043 336408 + 1.B.14.6.1
pfam Rep_566_c_3 Rep_566_c_3_271 336429 337901 + SusD_RagB | SusD-like_3
CAZyme Rep_566_c_3 Rep_566_c_3_272 338011 340779 + GH2
TC Rep_566_c_3 Rep_566_c_3_273 341058 344258 + 1.B.14.6.1
TC Rep_566_c_3 Rep_566_c_3_274 344273 345757 + 8.A.46.1.3
CAZyme Rep_566_c_3 Rep_566_c_3_275 345902 348184 + GH92
pfam Rep_566_c_3 Rep_566_c_3_276 348195 349277 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
STP Rep_566_c_3 Rep_566_c_3_277 349333 349899 + Sigma70_r2 | Sigma70_r4_2
CAZyme Rep_566_c_3 Rep_566_c_3_278 349996 352812 + GH13_20
STP Rep_566_c_3 Rep_566_c_3_279 352863 353243 - Glyoxalase
pfam Rep_566_c_3 Rep_566_c_3_280 353253 354605 - SUFBD_core | SufBD_N
TC Rep_566_c_3 Rep_566_c_3_281 354598 355353 - 3.A.1.27.4
Gene ID: Rep_566_c_3_270
Type: TC
Location: 333043 - 336408 (+)
Gene ID: Rep_566_c_3_271
Type: pfam
Location: 336429 - 337901 (+)
Gene ID: Rep_566_c_3_272
Type: CAZyme
Location: 338011 - 340779 (+)
Gene ID: Rep_566_c_3_273
Type: TC
Location: 341058 - 344258 (+)
Gene ID: Rep_566_c_3_274
Type: TC
Location: 344273 - 345757 (+)
Gene ID: Rep_566_c_3_275
Type: CAZyme
Location: 345902 - 348184 (+)
Gene ID: Rep_566_c_3_276
Type: pfam
Location: 348195 - 349277 (+)
Gene ID: Rep_566_c_3_277
Type: STP
Location: 349333 - 349899 (+)
Gene ID: Rep_566_c_3_278
Type: CAZyme
Location: 349996 - 352812 (+)
Gene ID: Rep_566_c_3_279
Type: STP
Location: 352863 - 353243 (-)
Gene ID: Rep_566_c_3_280
Type: pfam
Location: 353253 - 354605 (-)
Gene ID: Rep_566_c_3_281
Type: TC
Location: 354598 - 355353 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_566_c_3_271 vegetarian > omnivore 1.12466 0.00110
Rep_566_c_3_274 vegetarian > omnivore 1.00810 0.00110

🧭 Explore Read Mapping of CGC

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