Cluster: Rep_566_CGC38
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_566
- CGC Family ID: CGCFAM_03620
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_566_c_1 | Rep_566_c_1_736 | 892293 | 895745 | + | 1.B.14.6.1 |
| pfam | Rep_566_c_1 | Rep_566_c_1_737 | 895758 | 897398 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_738 | 897408 | 898748 | + | GH177 |
| TC | Rep_566_c_1 | Rep_566_c_1_739 | 898775 | 900106 | + | 2.A.1.7.9 |
| CAZyme | Rep_566_c_1 | Rep_566_c_1_740 | 900112 | 901296 | + | CE9 |
Gene ID: Rep_566_c_1_736
Type: TC
Location: 892293 - 895745 (+)
Type: TC
Location: 892293 - 895745 (+)
Gene ID: Rep_566_c_1_737
Type: pfam
Location: 895758 - 897398 (+)
Type: pfam
Location: 895758 - 897398 (+)
Gene ID: Rep_566_c_1_738
Type: CAZyme
Location: 897408 - 898748 (+)
Type: CAZyme
Location: 897408 - 898748 (+)
Gene ID: Rep_566_c_1_739
Type: TC
Location: 898775 - 900106 (+)
Type: TC
Location: 898775 - 900106 (+)
Gene ID: Rep_566_c_1_740
Type: CAZyme
Location: 900112 - 901296 (+)
Type: CAZyme
Location: 900112 - 901296 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.