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Cluster: Rep_566_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_566_c_1 Rep_566_c_1_601 708301 710184 + 3.A.18.1.1
CAZyme Rep_566_c_1 Rep_566_c_1_602 710302 711876 - GH20
peptidase Rep_566_c_1 Rep_566_c_1_603 712005 713615 + C69.UPW
peptidase Rep_566_c_1 Rep_566_c_1_604 713654 714826 + C01.UPA
CAZyme Rep_566_c_1 Rep_566_c_1_605 715034 717175 + GH29
NULL(UNKNOWN) Rep_566_c_1 Rep_566_c_1_606 717631 718047 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_566_c_1 Rep_566_c_1_607 717870 720680 - GH2
STP Rep_566_c_1 Rep_566_c_1_608 720726 724025 - TPR_2
TC Rep_566_c_1 Rep_566_c_1_609 724035 724346 - 2.A.1.1.26
TC Rep_566_c_1 Rep_566_c_1_610 724364 725407 - 2.A.1.1.3
Gene ID: Rep_566_c_1_601
Type: TC
Location: 708301 - 710184 (+)
Gene ID: Rep_566_c_1_602
Type: CAZyme
Location: 710302 - 711876 (-)
Gene ID: Rep_566_c_1_603
Type: peptidase
Location: 712005 - 713615 (+)
Gene ID: Rep_566_c_1_604
Type: peptidase
Location: 713654 - 714826 (+)
Gene ID: Rep_566_c_1_605
Type: CAZyme
Location: 715034 - 717175 (+)
Gene ID: Rep_566_c_1_606
Type:
Location: 717631 - 718047 (+)
Gene ID: Rep_566_c_1_607
Type: CAZyme
Location: 717870 - 720680 (-)
Gene ID: Rep_566_c_1_608
Type: STP
Location: 720726 - 724025 (-)
Gene ID: Rep_566_c_1_609
Type: TC
Location: 724035 - 724346 (-)
Gene ID: Rep_566_c_1_610
Type: TC
Location: 724364 - 725407 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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