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Cluster: Rep_566_CGC69

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_566_c_4 Rep_566_c_4_198 212208 214325 - GH2
TF Rep_566_c_4 Rep_566_c_4_199 214473 218504 + HTH_AraC
TC Rep_566_c_4 Rep_566_c_4_200 218686 221766 + 1.B.14.6.1
TC Rep_566_c_4 Rep_566_c_4_201 221787 223385 + 8.A.46.1.6
CAZyme Rep_566_c_4 Rep_566_c_4_202 223581 224747 + GH105
TC Rep_566_c_4 Rep_566_c_4_203 224849 228076 + 9.A.25.1.1
pfam Rep_566_c_4 Rep_566_c_4_204 228063 231020 - AAA_23 | AAA_29 | SbcC_Walker_B
pfam Rep_566_c_4 Rep_566_c_4_205 231017 232261 - Metallophos | SbcD_C
TC Rep_566_c_4 Rep_566_c_4_206 232398 234068 + 2.A.81.1.2
Gene ID: Rep_566_c_4_198
Type: CAZyme
Location: 212208 - 214325 (-)
Gene ID: Rep_566_c_4_199
Type: TF
Location: 214473 - 218504 (+)
Gene ID: Rep_566_c_4_200
Type: TC
Location: 218686 - 221766 (+)
Gene ID: Rep_566_c_4_201
Type: TC
Location: 221787 - 223385 (+)
Gene ID: Rep_566_c_4_202
Type: CAZyme
Location: 223581 - 224747 (+)
Gene ID: Rep_566_c_4_203
Type: TC
Location: 224849 - 228076 (+)
Gene ID: Rep_566_c_4_204
Type: pfam
Location: 228063 - 231020 (-)
Gene ID: Rep_566_c_4_205
Type: pfam
Location: 231017 - 232261 (-)
Gene ID: Rep_566_c_4_206
Type: TC
Location: 232398 - 234068 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_566_c_4_201 vegetarian > vegan 1.10002 0.00565

🧭 Explore Read Mapping of CGC

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