Cluster: Rep_566_CGC13
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_566
- CGC Family ID: CGCFAM_04479
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_566_c_0 | Rep_566_c_0_1333 | 1374461 | 1375282 | - | GT2 |
| NULL(UNKNOWN) | Rep_566_c_0 | Rep_566_c_0_1334 | 1375295 | 1376842 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_566_c_0 | Rep_566_c_0_1335 | 1376849 | 1377862 | - | GT2 |
| CAZyme | Rep_566_c_0 | Rep_566_c_0_1336 | 1377922 | 1378965 | - | GT2 |
| pfam | Rep_566_c_0 | Rep_566_c_0_1337 | 1378981 | 1380774 | - | Asn_synthase |
| CAZyme | Rep_566_c_0 | Rep_566_c_0_1338 | 1380788 | 1381951 | - | GT2 |
| pfam | Rep_566_c_0 | Rep_566_c_0_1339 | 1381962 | 1382900 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | Rep_566_c_0 | Rep_566_c_0_1340 | 1383089 | 1384282 | + | GT2 |
| pfam | Rep_566_c_0 | Rep_566_c_0_1341 | 1384387 | 1385502 | - | Usp |
| NULL(UNKNOWN) | Rep_566_c_0 | Rep_566_c_0_1342 | 1385618 | 1385893 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_566_c_0 | Rep_566_c_0_1343 | 1386009 | 1386701 | - | 9.B.105.1.7 |
Gene ID: Rep_566_c_0_1333
Type: CAZyme
Location: 1374461 - 1375282 (-)
Type: CAZyme
Location: 1374461 - 1375282 (-)
Gene ID: Rep_566_c_0_1334
Type:
Location: 1375295 - 1376842 (-)
Type:
Location: 1375295 - 1376842 (-)
Gene ID: Rep_566_c_0_1335
Type: CAZyme
Location: 1376849 - 1377862 (-)
Type: CAZyme
Location: 1376849 - 1377862 (-)
Gene ID: Rep_566_c_0_1336
Type: CAZyme
Location: 1377922 - 1378965 (-)
Type: CAZyme
Location: 1377922 - 1378965 (-)
Gene ID: Rep_566_c_0_1337
Type: pfam
Location: 1378981 - 1380774 (-)
Type: pfam
Location: 1378981 - 1380774 (-)
Gene ID: Rep_566_c_0_1338
Type: CAZyme
Location: 1380788 - 1381951 (-)
Type: CAZyme
Location: 1380788 - 1381951 (-)
Gene ID: Rep_566_c_0_1339
Type: pfam
Location: 1381962 - 1382900 (-)
Type: pfam
Location: 1381962 - 1382900 (-)
Gene ID: Rep_566_c_0_1340
Type: CAZyme
Location: 1383089 - 1384282 (+)
Type: CAZyme
Location: 1383089 - 1384282 (+)
Gene ID: Rep_566_c_0_1341
Type: pfam
Location: 1384387 - 1385502 (-)
Type: pfam
Location: 1384387 - 1385502 (-)
Gene ID: Rep_566_c_0_1342
Type:
Location: 1385618 - 1385893 (-)
Type:
Location: 1385618 - 1385893 (-)
Gene ID: Rep_566_c_0_1343
Type: TC
Location: 1386009 - 1386701 (-)
Type: TC
Location: 1386009 - 1386701 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Tannerellaceae
Genus
Parabacteroides
Species
Parabacteroides johnsonii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.