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Cluster: Rep_566_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_566_c_1 Rep_566_c_1_688 815163 816050 + 1.B.14.6.1
NULL(UNKNOWN) Rep_566_c_1 Rep_566_c_1_689 815989 818274 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_566_c_1 Rep_566_c_1_690 818310 819836 + 8.A.46.1.4
CAZyme Rep_566_c_1 Rep_566_c_1_691 819897 823010 + GH106
CAZyme Rep_566_c_1 Rep_566_c_1_692 823080 825875 + CBM67 | GH78
pfam Rep_566_c_1 Rep_566_c_1_693 825887 827317 + Arabinose_Iso_C
pfam Rep_566_c_1 Rep_566_c_1_694 827553 830192 - MutS_V | MutS_I | MutS_II | MutS_IV | MutS_III
CAZyme Rep_566_c_1 Rep_566_c_1_695 830390 833176 - GH2
Gene ID: Rep_566_c_1_688
Type: TC
Location: 815163 - 816050 (+)
Gene ID: Rep_566_c_1_689
Type:
Location: 815989 - 818274 (+)
Gene ID: Rep_566_c_1_690
Type: TC
Location: 818310 - 819836 (+)
Gene ID: Rep_566_c_1_691
Type: CAZyme
Location: 819897 - 823010 (+)
Gene ID: Rep_566_c_1_692
Type: CAZyme
Location: 823080 - 825875 (+)
Gene ID: Rep_566_c_1_693
Type: pfam
Location: 825887 - 827317 (+)
Gene ID: Rep_566_c_1_694
Type: pfam
Location: 827553 - 830192 (-)
Gene ID: Rep_566_c_1_695
Type: CAZyme
Location: 830390 - 833176 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_566_c_1_690 vegetarian > omnivore 1.03374 0.00110

🧭 Explore Read Mapping of CGC

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