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Cluster: Rep_566_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_566_c_1 Rep_566_c_1_925 1120713 1121924 + GT4
pfam Rep_566_c_1 Rep_566_c_1_926 1121911 1122486 + DUF6056
pfam Rep_566_c_1 Rep_566_c_1_927 1122426 1123583 + DUF6056
CAZyme Rep_566_c_1 Rep_566_c_1_928 1123586 1124524 + GT2
CAZyme Rep_566_c_1 Rep_566_c_1_929 1124706 1125467 + GT2
TC Rep_566_c_1 Rep_566_c_1_930 1125493 1128012 + 9.B.144.1.4
CAZyme Rep_566_c_1 Rep_566_c_1_931 1128147 1129145 - GT2
pfam Rep_566_c_1 Rep_566_c_1_932 1129148 1129714 - Methyltransf_11 | Methyltransf_23 | Methyltransf_31
pfam Rep_566_c_1 Rep_566_c_1_933 1129988 1131361 - AdoHcyase_NAD | 2-Hacid_dh_C | AdoHcyase | KARI_N
TC Rep_566_c_1 Rep_566_c_1_934 1131652 1133307 - 4.C.1.1.7
Gene ID: Rep_566_c_1_925
Type: CAZyme
Location: 1120713 - 1121924 (+)
Gene ID: Rep_566_c_1_926
Type: pfam
Location: 1121911 - 1122486 (+)
Gene ID: Rep_566_c_1_927
Type: pfam
Location: 1122426 - 1123583 (+)
Gene ID: Rep_566_c_1_928
Type: CAZyme
Location: 1123586 - 1124524 (+)
Gene ID: Rep_566_c_1_929
Type: CAZyme
Location: 1124706 - 1125467 (+)
Gene ID: Rep_566_c_1_930
Type: TC
Location: 1125493 - 1128012 (+)
Gene ID: Rep_566_c_1_931
Type: CAZyme
Location: 1128147 - 1129145 (-)
Gene ID: Rep_566_c_1_932
Type: pfam
Location: 1129148 - 1129714 (-)
Gene ID: Rep_566_c_1_933
Type: pfam
Location: 1129988 - 1131361 (-)
Gene ID: Rep_566_c_1_934
Type: TC
Location: 1131652 - 1133307 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_566_c_1_925 vegetarian > vegan 1.64452 0.00565

🧭 Explore Read Mapping of CGC

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