Genome Details
Selected Rep_genome_ID: Rep_3396
Total Genomes Found: 4
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| B112.bin_43 | 2,664,877 | 91.28% | 0.67% | China(Inner Mongolia) | Asia | IMGG |
| CGMR028803 | 2,651,469 | 97.99% | 0.67% | China | Asia | CGMR |
| GH101_110 | 2,424,782 | 97.99% | 0.67% | NA | Africa | H3AfricaPhase2 |
| Rep_3396 | 2,340,074 | 96.6443% | 0.167785% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_3396_CGC7 | CGCFAM_00004 | Yes | 8 | 4 | alpha-glucan |
| Rep_3396_CGC14 | CGCFAM_00021 | Yes | 5 | 1 | |
| Rep_3396_CGC2 | CGCFAM_00246 | Yes | 7 | 2 | |
| Rep_3396_CGC13 | CGCFAM_00362 | Yes | 3 | 1 | |
| Rep_3396_CGC30 | CGCFAM_00488 | Yes | 6 | 2 | |
| Rep_3396_CGC36 | CGCFAM_00538 | Yes | 3 | 1 | |
| Rep_3396_CGC10 | CGCFAM_00999 | Yes | 3 | 1 | |
| Rep_3396_CGC35 | CGCFAM_01104 | Yes | 4 | 1 | |
| Rep_3396_CGC11 | CGCFAM_01263 | Yes | 8 | 1 | |
| Rep_3396_CGC27 | CGCFAM_02419 | Yes | 9 | 3 | |
| Rep_3396_CGC5 | CGCFAM_03267 | Yes | 5 | 1 | |
| Rep_3396_CGC34 | CGCFAM_04423 | Yes | 3 | 1 | |
| Rep_3396_CGC19 | CGCFAM_04689 | Yes | 9 | 2 | |
| Rep_3396_CGC15 | CGCFAM_05698 | Yes | 7 | 1 | |
| Rep_3396_CGC21 | CGCFAM_07146 | Yes | 4 | 1 | |
| Rep_3396_CGC1 | CGCFAM_09953 | Yes | 4 | 1 |
Top CAZyme Families