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Cluster: Rep_3396_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3396_c_6 Rep_3396_c_6_21 20437 22830 - GT35
CAZyme Rep_3396_c_6 Rep_3396_c_6_22 23014 24432 - GT5
pfam Rep_3396_c_6 Rep_3396_c_6_23 24454 25572 - NTP_transferase | Hexapep_GlmU
pfam Rep_3396_c_6 Rep_3396_c_6_24 25600 26808 - NTP_transferase | Hexapep_GlmU
CAZyme Rep_3396_c_6 Rep_3396_c_6_25 26840 28555 - GH13_9
CAZyme Rep_3396_c_6 Rep_3396_c_6_26 28932 30767 + GH13_39
TC Rep_3396_c_6 Rep_3396_c_6_27 31158 32090 + 3.A.1.1.10
TC Rep_3396_c_6 Rep_3396_c_6_28 32105 33007 + 3.A.1.1.10
Gene ID: Rep_3396_c_6_21
Type: CAZyme
Location: 20437 - 22830 (-)
Gene ID: Rep_3396_c_6_22
Type: CAZyme
Location: 23014 - 24432 (-)
Gene ID: Rep_3396_c_6_23
Type: pfam
Location: 24454 - 25572 (-)
Gene ID: Rep_3396_c_6_24
Type: pfam
Location: 25600 - 26808 (-)
Gene ID: Rep_3396_c_6_25
Type: CAZyme
Location: 26840 - 28555 (-)
Gene ID: Rep_3396_c_6_26
Type: CAZyme
Location: 28932 - 30767 (+)
Gene ID: Rep_3396_c_6_27
Type: TC
Location: 31158 - 32090 (+)
Gene ID: Rep_3396_c_6_28
Type: TC
Location: 32105 - 33007 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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