Cluster: Rep_3396_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3396
- CGC Family ID: CGCFAM_00246
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3396_c_2 | Rep_3396_c_2_17 | 17648 | 20749 | - | GH38 |
| CAZyme | Rep_3396_c_2 | Rep_3396_c_2_18 | 20783 | 21772 | - | GH130_2 |
| pfam | Rep_3396_c_2 | Rep_3396_c_2_19 | 21866 | 23335 | - | DUF3502 |
| TC | Rep_3396_c_2 | Rep_3396_c_2_20 | 23389 | 24309 | - | 3.A.1.1.29 |
| TC | Rep_3396_c_2 | Rep_3396_c_2_21 | 24326 | 25279 | - | 3.A.1.1.29 |
| TF | Rep_3396_c_2 | Rep_3396_c_2_22 | 25614 | 26648 | + | LacI |
| TC | Rep_3396_c_2 | Rep_3396_c_2_23 | 26743 | 28275 | - | 2.A.25.1.3 |
Gene ID: Rep_3396_c_2_17
Type: CAZyme
Location: 17648 - 20749 (-)
Type: CAZyme
Location: 17648 - 20749 (-)
Gene ID: Rep_3396_c_2_18
Type: CAZyme
Location: 20783 - 21772 (-)
Type: CAZyme
Location: 20783 - 21772 (-)
Gene ID: Rep_3396_c_2_19
Type: pfam
Location: 21866 - 23335 (-)
Type: pfam
Location: 21866 - 23335 (-)
Gene ID: Rep_3396_c_2_20
Type: TC
Location: 23389 - 24309 (-)
Type: TC
Location: 23389 - 24309 (-)
Gene ID: Rep_3396_c_2_21
Type: TC
Location: 24326 - 25279 (-)
Type: TC
Location: 24326 - 25279 (-)
Gene ID: Rep_3396_c_2_22
Type: TF
Location: 25614 - 26648 (+)
Type: TF
Location: 25614 - 26648 (+)
Gene ID: Rep_3396_c_2_23
Type: TC
Location: 26743 - 28275 (-)
Type: TC
Location: 26743 - 28275 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.