Cluster: Rep_3396_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3396
- CGC Family ID: CGCFAM_03267
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3396_c_5 | Rep_3396_c_5_10 | 11156 | 12052 | - | 3.A.1.1.10 |
| TC | Rep_3396_c_5 | Rep_3396_c_5_11 | 12080 | 13048 | - | 3.A.1.1.10 |
| peptidase | Rep_3396_c_5 | Rep_3396_c_5_12 | 13498 | 15186 | - | M38.UNW |
| TF | Rep_3396_c_5 | Rep_3396_c_5_13 | 15199 | 16065 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_3396_c_5 | Rep_3396_c_5_14 | 16254 | 19265 | + | GH2 |
Gene ID: Rep_3396_c_5_10
Type: TC
Location: 11156 - 12052 (-)
Type: TC
Location: 11156 - 12052 (-)
Gene ID: Rep_3396_c_5_11
Type: TC
Location: 12080 - 13048 (-)
Type: TC
Location: 12080 - 13048 (-)
Gene ID: Rep_3396_c_5_12
Type: peptidase
Location: 13498 - 15186 (-)
Type: peptidase
Location: 13498 - 15186 (-)
Gene ID: Rep_3396_c_5_13
Type: TF
Location: 15199 - 16065 (-)
Type: TF
Location: 15199 - 16065 (-)
Gene ID: Rep_3396_c_5_14
Type: CAZyme
Location: 16254 - 19265 (+)
Type: CAZyme
Location: 16254 - 19265 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3396_c_5_10 | vegetarian > vegan | 1.33850 | 0.00229 |