Cluster: Rep_3396_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3396
- CGC Family ID: CGCFAM_00488
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3396_c_54 | Rep_3396_c_54_2 | 656 | 2548 | - | GH20 |
| NULL(UNKNOWN) | Rep_3396_c_54 | Rep_3396_c_54_3 | 2601 | 3458 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3396_c_54 | Rep_3396_c_54_4 | 3497 | 4381 | - | 3.A.1.1.10 |
| TC | Rep_3396_c_54 | Rep_3396_c_54_5 | 4395 | 5324 | - | 3.A.1.1.10 |
| TC | Rep_3396_c_54 | Rep_3396_c_54_6 | 5429 | 7018 | - | 3.A.1.1.10 |
| CAZyme | Rep_3396_c_54 | Rep_3396_c_54_7 | 7059 | 7766 | - | CE14 |
Gene ID: Rep_3396_c_54_2
Type: CAZyme
Location: 656 - 2548 (-)
Type: CAZyme
Location: 656 - 2548 (-)
Gene ID: Rep_3396_c_54_3
Type:
Location: 2601 - 3458 (-)
Type:
Location: 2601 - 3458 (-)
Gene ID: Rep_3396_c_54_4
Type: TC
Location: 3497 - 4381 (-)
Type: TC
Location: 3497 - 4381 (-)
Gene ID: Rep_3396_c_54_5
Type: TC
Location: 4395 - 5324 (-)
Type: TC
Location: 4395 - 5324 (-)
Gene ID: Rep_3396_c_54_6
Type: TC
Location: 5429 - 7018 (-)
Type: TC
Location: 5429 - 7018 (-)
Gene ID: Rep_3396_c_54_7
Type: CAZyme
Location: 7059 - 7766 (-)
Type: CAZyme
Location: 7059 - 7766 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.