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Cluster: Rep_3396_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3396_c_23 Rep_3396_c_23_2 994 1608 - 2.A.115.2.1
pfam Rep_3396_c_23 Rep_3396_c_23_3 1605 2375 - PNP_UDP_1
pfam Rep_3396_c_23 Rep_3396_c_23_4 2377 3033 - DeoC
CAZyme Rep_3396_c_23 Rep_3396_c_23_5 3046 4818 - GH123
pfam Rep_3396_c_23 Rep_3396_c_23_6 4846 5175 - MazG
pfam Rep_3396_c_23 Rep_3396_c_23_7 5181 6065 - ROK
CAZyme Rep_3396_c_23 Rep_3396_c_23_8 6062 7210 - CE9
TC Rep_3396_c_23 Rep_3396_c_23_9 7225 8139 - 3.A.1.1.10
TC Rep_3396_c_23 Rep_3396_c_23_10 8153 9058 - 3.A.1.1.10
Gene ID: Rep_3396_c_23_2
Type: TC
Location: 994 - 1608 (-)
Gene ID: Rep_3396_c_23_3
Type: pfam
Location: 1605 - 2375 (-)
Gene ID: Rep_3396_c_23_4
Type: pfam
Location: 2377 - 3033 (-)
Gene ID: Rep_3396_c_23_5
Type: CAZyme
Location: 3046 - 4818 (-)
Gene ID: Rep_3396_c_23_6
Type: pfam
Location: 4846 - 5175 (-)
Gene ID: Rep_3396_c_23_7
Type: pfam
Location: 5181 - 6065 (-)
Gene ID: Rep_3396_c_23_8
Type: CAZyme
Location: 6062 - 7210 (-)
Gene ID: Rep_3396_c_23_9
Type: TC
Location: 7225 - 8139 (-)
Gene ID: Rep_3396_c_23_10
Type: TC
Location: 8153 - 9058 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3396_c_23_9 vegetarian > vegan 1.13918 0.00229

🧭 Explore Read Mapping of CGC

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