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Cluster: Rep_3396_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3396_c_39 Rep_3396_c_39_2 723 1679 + 3.A.1.1.10
TC Rep_3396_c_39 Rep_3396_c_39_3 1695 2609 + 3.A.1.1.10
TC Rep_3396_c_39 Rep_3396_c_39_4 2699 4513 + 3.A.1.1.10
sulfatase Rep_3396_c_39 Rep_3396_c_39_5 4650 7022 + S1_50
CAZyme Rep_3396_c_39 Rep_3396_c_39_6 7038 9320 + GH94
CAZyme Rep_3396_c_39 Rep_3396_c_39_7 9335 11365 + GH141
NULL(UNKNOWN) Rep_3396_c_39 Rep_3396_c_39_8 11520 11909 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_3396_c_39 Rep_3396_c_39_9 12807 13049 + HTH_AraC
CAZyme Rep_3396_c_39 Rep_3396_c_39_10 13046 14263 + GH29
Gene ID: Rep_3396_c_39_2
Type: TC
Location: 723 - 1679 (+)
Gene ID: Rep_3396_c_39_3
Type: TC
Location: 1695 - 2609 (+)
Gene ID: Rep_3396_c_39_4
Type: TC
Location: 2699 - 4513 (+)
Gene ID: Rep_3396_c_39_5
Type: sulfatase
Location: 4650 - 7022 (+)
Gene ID: Rep_3396_c_39_6
Type: CAZyme
Location: 7038 - 9320 (+)
Gene ID: Rep_3396_c_39_7
Type: CAZyme
Location: 9335 - 11365 (+)
Gene ID: Rep_3396_c_39_8
Type:
Location: 11520 - 11909 (+)
Gene ID: Rep_3396_c_39_9
Type: TF
Location: 12807 - 13049 (+)
Gene ID: Rep_3396_c_39_10
Type: CAZyme
Location: 13046 - 14263 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3396_c_39_4 vegetarian > vegan 2.51915 0.00229

🧭 Explore Read Mapping of CGC

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