Cluster: Rep_3396_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3396
- CGC Family ID: CGCFAM_00362
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3396_c_14 | Rep_3396_c_14_4 | 3885 | 5192 | - | GH4 |
| TF | Rep_3396_c_14 | Rep_3396_c_14_5 | 5348 | 6214 | + | HTH_AraC | HTH_AraC |
| TC | Rep_3396_c_14 | Rep_3396_c_14_6 | 6459 | 7547 | + | 1.A.23.4.1 |
Gene ID: Rep_3396_c_14_4
Type: CAZyme
Location: 3885 - 5192 (-)
Type: CAZyme
Location: 3885 - 5192 (-)
Gene ID: Rep_3396_c_14_5
Type: TF
Location: 5348 - 6214 (+)
Type: TF
Location: 5348 - 6214 (+)
Gene ID: Rep_3396_c_14_6
Type: TC
Location: 6459 - 7547 (+)
Type: TC
Location: 6459 - 7547 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Merdivicinus
Species
Merdivicinus sp900555435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3396_c_14_4 | vegetarian > vegan | 1.00811 | 0.00229 |