Genome Details
Selected Rep_genome_ID: HRGMv2_4240
Total Genomes Found: 1
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| HRGMv2_4240 | 2,604,162 | 92.29% | 0.568% | UK | Europe | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_4240_CGC7 | CGCFAM_00007 | Yes | 4 | 1 | |
| HRGMv2_4240_CGC19 | CGCFAM_00009 | Yes | 5 | 2 | |
| HRGMv2_4240_CGC24 | CGCFAM_00010 | Yes | 4 | 1 | alpha-glucan |
| HRGMv2_4240_CGC10 | CGCFAM_00032 | Yes | 3 | 1 | |
| HRGMv2_4240_CGC6 | CGCFAM_00039 | Yes | 13 | 4 | |
| HRGMv2_4240_CGC3 | CGCFAM_00258 | Yes | 15 | 1 | |
| HRGMv2_4240_CGC16 | CGCFAM_00460 | Yes | 7 | 2 | |
| HRGMv2_4240_CGC20 | CGCFAM_01501 | Yes | 4 | 1 | |
| HRGMv2_4240_CGC18 | CGCFAM_02161 | Yes | 7 | 1 | |
| HRGMv2_4240_CGC2 | CGCFAM_02303 | Yes | 8 | 2 | |
| HRGMv2_4240_CGC15 | CGCFAM_03579 | Yes | 3 | 1 | |
| HRGMv2_4240_CGC23 | CGCFAM_03805 | Yes | 3 | 1 | |
| HRGMv2_4240_CGC21 | CGCFAM_04595 | Yes | 3 | 1 | |
| HRGMv2_4240_CGC13 | CGCFAM_08182 | Yes | 6 | 2 | |
| HRGMv2_4240_CGC17 | CGCFAM_10567 | Yes | 8 | 1 | |
| HRGMv2_4240_CGC22 | CGCFAM_10568 | Yes | 4 | 1 | |
| HRGMv2_4240_CGC8 | CGCFAM_10569 | Yes | 3 | 1 |
Top CAZyme Families