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Cluster: HRGMv2_4240_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4240_7 HRGMv2_4240_7_16 14898 16691 - 3.A.1.106.3
TC HRGMv2_4240_7 HRGMv2_4240_7_17 16682 18406 - 3.A.1.106.3
CAZyme HRGMv2_4240_7 HRGMv2_4240_7_18 18778 20886 - GH3
TC HRGMv2_4240_7 HRGMv2_4240_7_19 20946 21803 - 3.A.1.1.18
TC HRGMv2_4240_7 HRGMv2_4240_7_20 21817 22704 - 3.A.1.1.4
STP HRGMv2_4240_7 HRGMv2_4240_7_21 22849 24147 - SBP_bac_1
TF HRGMv2_4240_7 HRGMv2_4240_7_22 24482 25342 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_4240_7 HRGMv2_4240_7_23 25387 26577 + CE20
Gene ID: HRGMv2_4240_7_16
Type: TC
Location: 14898 - 16691 (-)
Gene ID: HRGMv2_4240_7_17
Type: TC
Location: 16682 - 18406 (-)
Gene ID: HRGMv2_4240_7_18
Type: CAZyme
Location: 18778 - 20886 (-)
Gene ID: HRGMv2_4240_7_19
Type: TC
Location: 20946 - 21803 (-)
Gene ID: HRGMv2_4240_7_20
Type: TC
Location: 21817 - 22704 (-)
Gene ID: HRGMv2_4240_7_21
Type: STP
Location: 22849 - 24147 (-)
Gene ID: HRGMv2_4240_7_22
Type: TF
Location: 24482 - 25342 (+)
Gene ID: HRGMv2_4240_7_23
Type: CAZyme
Location: 25387 - 26577 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Merdiplasma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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