Cluster: HRGMv2_4240_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_00007
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4240_38 | HRGMv2_4240_38_8 | 7107 | 7895 | + | 3.A.1.103.4 |
| TC | HRGMv2_4240_38 | HRGMv2_4240_38_9 | 7907 | 9841 | + | 3.A.1.103.1 |
| pfam | HRGMv2_4240_38 | HRGMv2_4240_38_10 | 9893 | 11077 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | HRGMv2_4240_38 | HRGMv2_4240_38_11 | 11108 | 13558 | + | GT2 | GT4 |
Gene ID: HRGMv2_4240_38_8
Type: TC
Location: 7107 - 7895 (+)
Type: TC
Location: 7107 - 7895 (+)
Gene ID: HRGMv2_4240_38_9
Type: TC
Location: 7907 - 9841 (+)
Type: TC
Location: 7907 - 9841 (+)
Gene ID: HRGMv2_4240_38_10
Type: pfam
Location: 9893 - 11077 (+)
Type: pfam
Location: 9893 - 11077 (+)
Gene ID: HRGMv2_4240_38_11
Type: CAZyme
Location: 11108 - 13558 (+)
Type: CAZyme
Location: 11108 - 13558 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.