Cluster: HRGMv2_4240_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_10568
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4240_186 | HRGMv2_4240_186_1 | 2 | 670 | + | GH18 |
| STP | HRGMv2_4240_186 | HRGMv2_4240_186_2 | 686 | 2137 | + | Aminotran_1_2 |
| pfam | HRGMv2_4240_186 | HRGMv2_4240_186_3 | 2207 | 2821 | + | Guanylate_kin |
| TC | HRGMv2_4240_186 | HRGMv2_4240_186_4 | 3104 | 4240 | + | 3.B.1.1.5 |
Gene ID: HRGMv2_4240_186_1
Type: CAZyme
Location: 2 - 670 (+)
Type: CAZyme
Location: 2 - 670 (+)
Gene ID: HRGMv2_4240_186_2
Type: STP
Location: 686 - 2137 (+)
Type: STP
Location: 686 - 2137 (+)
Gene ID: HRGMv2_4240_186_3
Type: pfam
Location: 2207 - 2821 (+)
Type: pfam
Location: 2207 - 2821 (+)
Gene ID: HRGMv2_4240_186_4
Type: TC
Location: 3104 - 4240 (+)
Type: TC
Location: 3104 - 4240 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.