Cluster: HRGMv2_4240_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_00009
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4240_123 | HRGMv2_4240_123_1 | 1 | 486 | + | 3.A.1.104.1 |
| TC | HRGMv2_4240_123 | HRGMv2_4240_123_2 | 511 | 1881 | + | 3.A.1.103.6 |
| pfam | HRGMv2_4240_123 | HRGMv2_4240_123_3 | 1908 | 2828 | + | RrnaAD | CMAS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | HRGMv2_4240_123 | HRGMv2_4240_123_4 | 2835 | 5873 | + | GT2 | GT2 |
| CAZyme | HRGMv2_4240_123 | HRGMv2_4240_123_5 | 5926 | 7581 | + | GT2 |
Gene ID: HRGMv2_4240_123_1
Type: TC
Location: 1 - 486 (+)
Type: TC
Location: 1 - 486 (+)
Gene ID: HRGMv2_4240_123_2
Type: TC
Location: 511 - 1881 (+)
Type: TC
Location: 511 - 1881 (+)
Gene ID: HRGMv2_4240_123_3
Type: pfam
Location: 1908 - 2828 (+)
Type: pfam
Location: 1908 - 2828 (+)
Gene ID: HRGMv2_4240_123_4
Type: CAZyme
Location: 2835 - 5873 (+)
Type: CAZyme
Location: 2835 - 5873 (+)
Gene ID: HRGMv2_4240_123_5
Type: CAZyme
Location: 5926 - 7581 (+)
Type: CAZyme
Location: 5926 - 7581 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.