Cluster: HRGMv2_4240_CGC6
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_00039
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4240_37 | HRGMv2_4240_37_1 | 3 | 926 | - | GT2 |
| pfam | HRGMv2_4240_37 | HRGMv2_4240_37_2 | 952 | 2469 | - | LytR_cpsA_psr |
| TC | HRGMv2_4240_37 | HRGMv2_4240_37_3 | 2520 | 3920 | - | 9.B.18.1.1 |
| CAZyme | HRGMv2_4240_37 | HRGMv2_4240_37_4 | 3945 | 4907 | - | GT2 |
| CAZyme | HRGMv2_4240_37 | HRGMv2_4240_37_5 | 4922 | 6721 | - | GT2 | GT2 |
| STP | HRGMv2_4240_37 | HRGMv2_4240_37_6 | 6734 | 7870 | - | Aminotran_1_2 |
| TC | HRGMv2_4240_37 | HRGMv2_4240_37_7 | 7899 | 8255 | - | 2.A.7.33.5 |
| NULL(UNKNOWN) | HRGMv2_4240_37 | HRGMv2_4240_37_8 | 8239 | 8670 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4240_37 | HRGMv2_4240_37_9 | 8916 | 9698 | - | 3.A.1.14.1 |
| TC | HRGMv2_4240_37 | HRGMv2_4240_37_10 | 9708 | 10727 | - | 3.A.1.14.9 |
| STP | HRGMv2_4240_37 | HRGMv2_4240_37_11 | 10758 | 11699 | - | Peripla_BP_2 |
| pfam | HRGMv2_4240_37 | HRGMv2_4240_37_12 | 12398 | 15142 | - | YfhO |
| CAZyme | HRGMv2_4240_37 | HRGMv2_4240_37_13 | 15165 | 15902 | - | GT2 |
Gene ID: HRGMv2_4240_37_1
Type: CAZyme
Location: 3 - 926 (-)
Type: CAZyme
Location: 3 - 926 (-)
Gene ID: HRGMv2_4240_37_2
Type: pfam
Location: 952 - 2469 (-)
Type: pfam
Location: 952 - 2469 (-)
Gene ID: HRGMv2_4240_37_3
Type: TC
Location: 2520 - 3920 (-)
Type: TC
Location: 2520 - 3920 (-)
Gene ID: HRGMv2_4240_37_4
Type: CAZyme
Location: 3945 - 4907 (-)
Type: CAZyme
Location: 3945 - 4907 (-)
Gene ID: HRGMv2_4240_37_5
Type: CAZyme
Location: 4922 - 6721 (-)
Type: CAZyme
Location: 4922 - 6721 (-)
Gene ID: HRGMv2_4240_37_6
Type: STP
Location: 6734 - 7870 (-)
Type: STP
Location: 6734 - 7870 (-)
Gene ID: HRGMv2_4240_37_7
Type: TC
Location: 7899 - 8255 (-)
Type: TC
Location: 7899 - 8255 (-)
Gene ID: HRGMv2_4240_37_8
Type:
Location: 8239 - 8670 (-)
Type:
Location: 8239 - 8670 (-)
Gene ID: HRGMv2_4240_37_9
Type: TC
Location: 8916 - 9698 (-)
Type: TC
Location: 8916 - 9698 (-)
Gene ID: HRGMv2_4240_37_10
Type: TC
Location: 9708 - 10727 (-)
Type: TC
Location: 9708 - 10727 (-)
Gene ID: HRGMv2_4240_37_11
Type: STP
Location: 10758 - 11699 (-)
Type: STP
Location: 10758 - 11699 (-)
Gene ID: HRGMv2_4240_37_12
Type: pfam
Location: 12398 - 15142 (-)
Type: pfam
Location: 12398 - 15142 (-)
Gene ID: HRGMv2_4240_37_13
Type: CAZyme
Location: 15165 - 15902 (-)
Type: CAZyme
Location: 15165 - 15902 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.