Cluster: HRGMv2_4240_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_04595
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4240_145 | HRGMv2_4240_145_3 | 2061 | 3638 | + | CBM91 | GH43_12 |
| pfam | HRGMv2_4240_145 | HRGMv2_4240_145_4 | 3635 | 4369 | + | Lyx_isomer |
| TC | HRGMv2_4240_145 | HRGMv2_4240_145_5 | 4395 | 5354 | - | 3.A.1.34.1 |
Gene ID: HRGMv2_4240_145_3
Type: CAZyme
Location: 2061 - 3638 (+)
Type: CAZyme
Location: 2061 - 3638 (+)
Gene ID: HRGMv2_4240_145_4
Type: pfam
Location: 3635 - 4369 (+)
Type: pfam
Location: 3635 - 4369 (+)
Gene ID: HRGMv2_4240_145_5
Type: TC
Location: 4395 - 5354 (-)
Type: TC
Location: 4395 - 5354 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.