Cluster: HRGMv2_4240_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_08182
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4240_66 | HRGMv2_4240_66_1 | 98 | 2026 | - | CBM48 | GH13_9 |
| CAZyme | HRGMv2_4240_66 | HRGMv2_4240_66_2 | 2055 | 3404 | - | GH13_20 |
| STP | HRGMv2_4240_66 | HRGMv2_4240_66_3 | 3448 | 4020 | - | TetR_N |
| pfam | HRGMv2_4240_66 | HRGMv2_4240_66_4 | 4180 | 6738 | - | TPR_8 |
| TC | HRGMv2_4240_66 | HRGMv2_4240_66_5 | 6839 | 8275 | - | 2.A.38.1.1 |
| TC | HRGMv2_4240_66 | HRGMv2_4240_66_6 | 8287 | 9648 | - | 2.A.38.1.1 |
Gene ID: HRGMv2_4240_66_1
Type: CAZyme
Location: 98 - 2026 (-)
Type: CAZyme
Location: 98 - 2026 (-)
Gene ID: HRGMv2_4240_66_2
Type: CAZyme
Location: 2055 - 3404 (-)
Type: CAZyme
Location: 2055 - 3404 (-)
Gene ID: HRGMv2_4240_66_3
Type: STP
Location: 3448 - 4020 (-)
Type: STP
Location: 3448 - 4020 (-)
Gene ID: HRGMv2_4240_66_4
Type: pfam
Location: 4180 - 6738 (-)
Type: pfam
Location: 4180 - 6738 (-)
Gene ID: HRGMv2_4240_66_5
Type: TC
Location: 6839 - 8275 (-)
Type: TC
Location: 6839 - 8275 (-)
Gene ID: HRGMv2_4240_66_6
Type: TC
Location: 8287 - 9648 (-)
Type: TC
Location: 8287 - 9648 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.