Cluster: HRGMv2_4240_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_4240
- CGC Family ID: CGCFAM_10569
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_4240_42 | HRGMv2_4240_42_3 | 1671 | 2231 | + | 9.B.105.1.5 |
| pfam | HRGMv2_4240_42 | HRGMv2_4240_42_4 | 2228 | 3175 | + | PseudoU_synth_2 |
| CAZyme | HRGMv2_4240_42 | HRGMv2_4240_42_5 | 3214 | 5514 | + | GH146 |
Gene ID: HRGMv2_4240_42_3
Type: TC
Location: 1671 - 2231 (+)
Type: TC
Location: 1671 - 2231 (+)
Gene ID: HRGMv2_4240_42_4
Type: pfam
Location: 2228 - 3175 (+)
Type: pfam
Location: 2228 - 3175 (+)
Gene ID: HRGMv2_4240_42_5
Type: CAZyme
Location: 3214 - 5514 (+)
Type: CAZyme
Location: 3214 - 5514 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Merdiplasma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.