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Cluster: HRGMv2_4240_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_4240_98 HRGMv2_4240_98_1 43 900 - 3.A.1.5.11
TC HRGMv2_4240_98 HRGMv2_4240_98_2 897 1841 - 3.A.1.5.20
TF HRGMv2_4240_98 HRGMv2_4240_98_3 1991 2902 - HTH_1
TC HRGMv2_4240_98 HRGMv2_4240_98_4 2909 3646 - 3.A.1.23.5
pfam HRGMv2_4240_98 HRGMv2_4240_98_5 3643 4455 - CbiQ
TC HRGMv2_4240_98 HRGMv2_4240_98_6 4452 5453 - 3.A.1.23.5
pfam HRGMv2_4240_98 HRGMv2_4240_98_7 5914 6672 + Ubie_methyltran | TehB | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_4240_98 HRGMv2_4240_98_8 6824 8155 + GT2
Gene ID: HRGMv2_4240_98_1
Type: TC
Location: 43 - 900 (-)
Gene ID: HRGMv2_4240_98_2
Type: TC
Location: 897 - 1841 (-)
Gene ID: HRGMv2_4240_98_3
Type: TF
Location: 1991 - 2902 (-)
Gene ID: HRGMv2_4240_98_4
Type: TC
Location: 2909 - 3646 (-)
Gene ID: HRGMv2_4240_98_5
Type: pfam
Location: 3643 - 4455 (-)
Gene ID: HRGMv2_4240_98_6
Type: TC
Location: 4452 - 5453 (-)
Gene ID: HRGMv2_4240_98_7
Type: pfam
Location: 5914 - 6672 (+)
Gene ID: HRGMv2_4240_98_8
Type: CAZyme
Location: 6824 - 8155 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Merdiplasma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_4240_98_2 vegan > omnivore 1.72523 0.01276

🧭 Explore Read Mapping of CGC

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